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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2191 O_TrvaMG13784_3prime_partial:A_TrvaMG_comp26716_c0_seq1
101bp
GO:0000212 P meiotic spindle organization
GO:0001745 P compound eye morphogenesis
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007054 P spindle assembly involved in male meiosis I
GO:0007067 P mitotic cell cycle
GO:0007126 P meiotic cell cycle
GO:0007140 P male meiotic nuclear division
GO:0007141 P male meiosis I
GO:0007283 P spermatogenesis
GO:0008315 P G2/MI transition of meiotic cell cycle
GO:0016787 F hydrolase activity
GO:0030718 P germ-line stem cell population maintenance
GO:0046872 F metal ion binding
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048137 P spermatocyte division
GO:0048749 P compound eye development
GO:0051078 P meiotic nuclear membrane disassembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0070481 P nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0071025 P RNA surveillance
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2192 O_TrvaMG13785_5prime_partial:A_TrvaMG_comp26716_c0_seq2
295bp
GO:0000212 P meiotic spindle organization
GO:0001745 P compound eye morphogenesis
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007049 P cell cycle
GO:0007054 P spindle assembly involved in male meiosis I
GO:0007067 P mitotic cell cycle
GO:0007126 P meiotic cell cycle
GO:0007140 P male meiotic nuclear division
GO:0007141 P male meiosis I
GO:0007283 P spermatogenesis
GO:0008315 P G2/MI transition of meiotic cell cycle
GO:0016787 F hydrolase activity
GO:0030718 P germ-line stem cell population maintenance
GO:0046872 F metal ion binding
GO:0048132 P female germ-line stem cell asymmetric division
GO:0048137 P spermatocyte division
GO:0048749 P compound eye development
GO:0051078 P meiotic nuclear membrane disassembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0070481 P nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
GO:0071025 P RNA surveillance
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2193 O_TrvaMG13786_5prime_partial:A_TrvaMG_comp26717_c0_seq1
601bp
GO:0001967 P suckling behavior
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004359 F glutaminase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006537 P glutamate biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006543 P glutamine catabolic process
GO:0007268 P chemical synaptic transmission
GO:0016787 F hydrolase activity
GO:0051289 P protein homotetramerization
2194 O_TrvaMG13787_5prime_partial:A_TrvaMG_comp26717_c0_seq2
650bp
GO:0001967 P suckling behavior
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004359 F glutaminase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006537 P glutamate biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006543 P glutamine catabolic process
GO:0007268 P chemical synaptic transmission
GO:0016787 F hydrolase activity
GO:0051289 P protein homotetramerization
2195 O_TrvaMG13788_5prime_partial:A_TrvaMG_comp26717_c0_seq3
661bp
GO:0001967 P suckling behavior
GO:0002087 P regulation of respiratory gaseous exchange by nervous system process
GO:0004359 F glutaminase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006537 P glutamate biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0006543 P glutamine catabolic process
GO:0007268 P chemical synaptic transmission
GO:0016787 F hydrolase activity
GO:0051289 P protein homotetramerization
2196 O_TrvaMG13789_complete:A_TrvaMG_comp26718_c0_seq1
619bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007346 P regulation of mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0045581 P negative regulation of T cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061578 F Lys63-specific deubiquitinase activity
GO:0070064 F proline-rich region binding
GO:0070266 P necroptotic process
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1902017 P regulation of cilium assembly
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 P regulation of intrinsic apoptotic signaling pathway
2197 O_TrvaMG1378_complete:A_TrvaMG_comp13386_c0_seq1
300bp
Peptidoglycan-recognition_protein_SA_[Papilio_xuthus]
GO:0002376 P immune system process
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0045087 P innate immune response
2198 O_TrvaMG13790_complete:A_TrvaMG_comp26718_c0_seq2
567bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007346 P regulation of mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0019901 F protein kinase binding
GO:0030496 C midbody
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0036064 C ciliary basal body
GO:0036459 F thiol-dependent deubiquitinase
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0042995 C cell projection
GO:0045581 P negative regulation of T cell differentiation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0061578 F Lys63-specific deubiquitinase activity
GO:0070064 F proline-rich region binding
GO:0070266 P necroptotic process
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0070536 P protein K63-linked deubiquitination
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0097542 C ciliary tip
GO:1901026 P ripoptosome assembly involved in necroptotic process
GO:1902017 P regulation of cilium assembly
GO:2001238 P positive regulation of extrinsic apoptotic signaling pathway
GO:2001242 P regulation of intrinsic apoptotic signaling pathway
2199 O_TrvaMG13791_5prime_partial:A_TrvaMG_comp26719_c0_seq1
556bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0044822 F RNA binding
2200 O_TrvaMG13794_5prime_partial:A_TrvaMG_comp26719_c0_seq2
556bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0044822 F RNA binding
2201 O_TrvaMG13797_complete:A_TrvaMG_comp26720_c0_seq1
623bp
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
2202 O_TrvaMG13798_complete:A_TrvaMG_comp26720_c0_seq2
1041bp
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007283 P spermatogenesis
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
2203 O_TrvaMG13799_5prime_partial:A_TrvaMG_comp26721_c0_seq1
2566bp
GO:0005044 F scavenger receptor activity
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0005918 C septate junction
GO:0005923 C bicellular tight junction
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030246 F carbohydrate binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035002 P liquid clearance, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0045217 P cell-cell junction maintenance
GO:0061689 C tricellular tight junction
GO:0090557 P establishment of endothelial intestinal barrier
GO:1904274 P tricellular tight junction assembly
2204 O_TrvaMG137_internal:A_TrvaMG_comp11315_c0_seq1
452bp
PREDICTED:_probable_ubiquitin_carboxyl-terminal_hydrolase_FAF-X_isoform_X2_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009791 P post-embryonic development
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021698 P cerebellar cortex structural organization
GO:0021766 P hippocampus development
GO:0030426 C growth cone
GO:0030509 P BMP signaling pathway
GO:0036459 F thiol-dependent deubiquitinase
GO:0042995 C cell projection
GO:0045177 C apical part of cell
GO:0048675 P axon extension
GO:0051301 P cell division
GO:0070410 F co-SMAD binding
GO:0071560 P cellular response to transforming growth factor beta stimulus
GO:1990138 P neuron projection extension
2205 O_TrvaMG13800_complete:A_TrvaMG_comp26722_c0_seq1
315bp
GO:0000027 P ribosomal large subunit assembly
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0019843 F rRNA binding
GO:0022008 P neurogenesis
GO:0051301 P cell division
GO:0090307 P mitotic spindle assembly
2206 O_TrvaMG13801_complete:A_TrvaMG_comp26723_c0_seq1
948bp
GO:0005216 F ion channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005254 F chloride channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034220 P ion transmembrane transport
GO:0034707 C chloride channel complex
GO:0034765 P regulation of ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
2207 O_TrvaMG13806_complete:A_TrvaMG_comp26724_c0_seq1
249bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007292 P female gamete generation
GO:0008285 P negative regulation of cell population proliferation
GO:0010468 P regulation of gene expression
GO:0042809 F vitamin D receptor binding
GO:0045671 P negative regulation of osteoclast differentiation
GO:0045778 P positive regulation of ossification
2208 O_TrvaMG13808_complete:A_TrvaMG_comp26725_c0_seq2
968bp
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
2209 O_TrvaMG13809_complete:A_TrvaMG_comp26726_c0_seq1
1111bp
GO:0001503 P ossification
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
2210 O_TrvaMG1380_5prime_partial:A_TrvaMG_comp13387_c0_seq1
198bp
chymotrypsin-like_serine_protease_precursor_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030574 P collagen catabolic process
2211 O_TrvaMG13813_complete:A_TrvaMG_comp26726_c0_seq2
1036bp
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
2212 O_TrvaMG13817_complete:A_TrvaMG_comp26726_c0_seq3
1036bp
GO:0001503 P ossification
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
2213 O_TrvaMG1381_internal:A_TrvaMG_comp13387_c1_seq1
117bp
chymotrypsin-like_serine_protease_precursor_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0007596 P blood coagulation
GO:0007599 P hemostasis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0042730 P fibrinolysis
2214 O_TrvaMG13821_complete:A_TrvaMG_comp26727_c1_seq1
1116bp
2215 O_TrvaMG13822_5prime_partial:A_TrvaMG_comp26727_c1_seq1
173bp
2216 O_TrvaMG13823_complete:A_TrvaMG_comp26727_c1_seq2
1116bp
2217 O_TrvaMG13824_5prime_partial:A_TrvaMG_comp26727_c1_seq2
173bp
2218 O_TrvaMG13825_complete:A_TrvaMG_comp26729_c0_seq1
693bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0044822 F RNA binding
2219 O_TrvaMG13827_complete:A_TrvaMG_comp26729_c0_seq2
695bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0044822 F RNA binding
2220 O_TrvaMG13829_complete:A_TrvaMG_comp26730_c0_seq1
495bp
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
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