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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1981 O_TrvaMG13435_complete:A_TrvaMG_comp26626_c0_seq5
285bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1982 O_TrvaMG13437_complete:A_TrvaMG_comp26626_c0_seq6
254bp
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
1983 O_TrvaMG1343_5prime_partial:A_TrvaMG_comp13337_c0_seq1
315bp
1984 O_TrvaMG13440_complete:A_TrvaMG_comp26626_c0_seq7
156bp
GO:0003779 F actin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005862 C muscle thin filament tropomyosin
GO:0006936 P muscle contraction
GO:0007315 P pole plasm assembly
GO:0010591 P regulation of lamellipodium assembly
GO:0016529 C sarcoplasmic reticulum
GO:0030017 C sarcomere
GO:0031941 C filamentous actin
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0051015 F actin filament binding
GO:0070865 C investment cone
1985 O_TrvaMG13441_complete:A_TrvaMG_comp26626_c0_seq7
114bp
1986 O_TrvaMG13442_complete:A_TrvaMG_comp26626_c0_seq8
285bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1987 O_TrvaMG13446_complete:A_TrvaMG_comp26626_c0_seq9
115bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1988 O_TrvaMG13447_complete:A_TrvaMG_comp26626_c0_seq10
286bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1989 O_TrvaMG13449_complete:A_TrvaMG_comp26626_c0_seq11
188bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1990 O_TrvaMG13452_complete:A_TrvaMG_comp26626_c0_seq11
114bp
1991 O_TrvaMG13453_complete:A_TrvaMG_comp26627_c0_seq1
571bp
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
1992 O_TrvaMG13457_complete:A_TrvaMG_comp26628_c0_seq1
459bp
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
1993 O_TrvaMG13460_complete:A_TrvaMG_comp26630_c0_seq1
292bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1994 O_TrvaMG13462_complete:A_TrvaMG_comp26630_c0_seq1
102bp
1995 O_TrvaMG13463_complete:A_TrvaMG_comp26630_c0_seq2
255bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
1996 O_TrvaMG13465_complete:A_TrvaMG_comp26631_c0_seq1
1775bp
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006606 P protein import into nucleus
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0010941 P regulation of cell death
GO:0016568 P chromatin organization
GO:0035064 F methylated histone binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1997 O_TrvaMG13469_internal:A_TrvaMG_comp26632_c0_seq1
372bp
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0010628 P positive regulation of gene expression
GO:0017022 F myosin binding
GO:0031453 P positive regulation of heterochromatin assembly
GO:0035060 C brahma complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
1998 O_TrvaMG1346_complete:A_TrvaMG_comp13337_c0_seq2
627bp
PREDICTED:_sodium-independent_sulfate_anion_transporter_[Amyelois_transitella]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
1999 O_TrvaMG13472_internal:A_TrvaMG_comp26632_c0_seq3
377bp
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005719 C euchromatin
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0010628 P positive regulation of gene expression
GO:0017022 F myosin binding
GO:0031453 P positive regulation of heterochromatin assembly
GO:0035060 C brahma complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0070604 C RSC-type complex
2000 O_TrvaMG13475_3prime_partial:A_TrvaMG_comp26633_c0_seq1
220bp
GO:0005768 C endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
2001 O_TrvaMG13476_3prime_partial:A_TrvaMG_comp26633_c0_seq2
260bp
GO:0005768 C endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
2002 O_TrvaMG13478_3prime_partial:A_TrvaMG_comp26633_c0_seq3
220bp
GO:0005768 C endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
2003 O_TrvaMG13479_3prime_partial:A_TrvaMG_comp26633_c0_seq4
260bp
GO:0005768 C endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016050 P vesicle organization
GO:0019898 C extrinsic component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
2004 O_TrvaMG13481_complete:A_TrvaMG_comp26634_c0_seq1
514bp
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
2005 O_TrvaMG13483_5prime_partial:A_TrvaMG_comp26634_c0_seq2
459bp
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
2006 O_TrvaMG13485_complete:A_TrvaMG_comp26635_c0_seq1
573bp
GO:0004872 F signaling receptor activity
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007409 P axonogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2007 O_TrvaMG13486_complete:A_TrvaMG_comp26635_c0_seq1
144bp
2008 O_TrvaMG13487_complete:A_TrvaMG_comp26636_c0_seq2
322bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
2009 O_TrvaMG13490_internal:A_TrvaMG_comp26636_c0_seq4
310bp
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
2010 O_TrvaMG13493_3prime_partial:A_TrvaMG_comp26636_c0_seq5
226bp
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
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