SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/15605
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1831 O_TrvaMG13169_5prime_partial:A_TrvaMG_comp26572_c0_seq1
111bp
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
1832 O_TrvaMG13170_5prime_partial:A_TrvaMG_comp26572_c0_seq3
111bp
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016787 F hydrolase activity
1833 O_TrvaMG13171_complete:A_TrvaMG_comp26573_c0_seq1
353bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010470 P regulation of gastrulation
GO:0038092 P nodal signaling pathway
GO:0045666 P positive regulation of neuron differentiation
GO:0060041 P retina development in camera-type eye
1834 O_TrvaMG13173_complete:A_TrvaMG_comp26573_c0_seq2
299bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010470 P regulation of gastrulation
GO:0038092 P nodal signaling pathway
GO:0045666 P positive regulation of neuron differentiation
GO:0060041 P retina development in camera-type eye
1835 O_TrvaMG13175_complete:A_TrvaMG_comp26573_c0_seq3
313bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010470 P regulation of gastrulation
GO:0038092 P nodal signaling pathway
GO:0045666 P positive regulation of neuron differentiation
GO:0060041 P retina development in camera-type eye
1836 O_TrvaMG13177_complete:A_TrvaMG_comp26573_c0_seq4
339bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010470 P regulation of gastrulation
GO:0038092 P nodal signaling pathway
GO:0045666 P positive regulation of neuron differentiation
GO:0060041 P retina development in camera-type eye
1837 O_TrvaMG13179_complete:A_TrvaMG_comp26576_c0_seq1
1214bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1838 O_TrvaMG13180_3prime_partial:A_TrvaMG_comp26576_c0_seq1
235bp
1839 O_TrvaMG13183_complete:A_TrvaMG_comp26576_c0_seq2
1214bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1840 O_TrvaMG13187_5prime_partial:A_TrvaMG_comp26577_c1_seq1
268bp
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
1841 O_TrvaMG13189_5prime_partial:A_TrvaMG_comp26577_c1_seq2
309bp
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
1842 O_TrvaMG1318_complete:A_TrvaMG_comp13317_c0_seq1
146bp
eukaryotic_translation_initiation_factor_1A_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0044822 F RNA binding
1843 O_TrvaMG13192_5prime_partial:A_TrvaMG_comp26577_c4_seq4
219bp
1844 O_TrvaMG13194_5prime_partial:A_TrvaMG_comp26577_c4_seq6
219bp
1845 O_TrvaMG13196_complete:A_TrvaMG_comp26578_c0_seq1
798bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
1846 O_TrvaMG13197_complete:A_TrvaMG_comp26578_c1_seq1
545bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0016491 F oxidoreductase activity
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
1847 O_TrvaMG1319_3prime_partial:A_TrvaMG_comp13320_c0_seq2
293bp
Heterogeneous_nuclear_ribonucleoprotein_at_87F_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001745 P compound eye morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0030529 C ribonucleoprotein complex
GO:0033119 P negative regulation of RNA splicing
GO:0036099 P female germ-line stem cell population maintenance
GO:0043565 F sequence-specific DNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0048477 P oogenesis
1848 O_TrvaMG13201_complete:A_TrvaMG_comp26578_c1_seq2
545bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0016491 F oxidoreductase activity
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
1849 O_TrvaMG13205_complete:A_TrvaMG_comp26579_c0_seq1
331bp
GO:0005737 C cytoplasm
GO:0031397 P negative regulation of protein ubiquitination
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0071796 F K6-linked polyubiquitin modification-dependent protein binding
1850 O_TrvaMG13206_complete:A_TrvaMG_comp26579_c0_seq2
338bp
GO:0005737 C cytoplasm
GO:0031397 P negative regulation of protein ubiquitination
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0071796 F K6-linked polyubiquitin modification-dependent protein binding
1851 O_TrvaMG13207_5prime_partial:A_TrvaMG_comp26580_c0_seq3
113bp
GO:0004622 F lysophospholipase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006643 P membrane lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0034349 P glial cell apoptotic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0051402 P neuron apoptotic process
GO:0061024 P membrane organization
1852 O_TrvaMG13208_3prime_partial:A_TrvaMG_comp26580_c1_seq2
118bp
GO:0004622 F lysophospholipase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006643 P membrane lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0034349 P glial cell apoptotic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0051402 P neuron apoptotic process
GO:0061024 P membrane organization
1853 O_TrvaMG13209_3prime_partial:A_TrvaMG_comp26580_c2_seq1
117bp
GO:0004622 F lysophospholipase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006643 P membrane lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0034349 P glial cell apoptotic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0051402 P neuron apoptotic process
GO:0061024 P membrane organization
1854 O_TrvaMG13210_internal:A_TrvaMG_comp26580_c2_seq2
791bp
GO:0004622 F lysophospholipase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006643 P membrane lipid metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0034349 P glial cell apoptotic process
GO:0046470 P phosphatidylcholine metabolic process
GO:0051402 P neuron apoptotic process
GO:0061024 P membrane organization
1855 O_TrvaMG13211_internal:A_TrvaMG_comp26580_c2_seq3
966bp
GO:0004622 F lysophospholipase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006643 P membrane lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0007608 P sensory perception of smell
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0032502 P developmental process
GO:0034349 P glial cell apoptotic process
GO:0045494 P photoreceptor cell maintenance
GO:0046470 P phosphatidylcholine metabolic process
GO:0051402 P neuron apoptotic process
GO:0061024 P membrane organization
1856 O_TrvaMG13212_complete:A_TrvaMG_comp26581_c0_seq1
393bp
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0007548 P sex differentiation
GO:0046660 P female sex differentiation
GO:0048070 P regulation of developmental pigmentation
GO:0048071 P sex-specific pigmentation
GO:0048086 P negative regulation of developmental pigmentation
GO:0048092 P negative regulation of male pigmentation
1857 O_TrvaMG13213_complete:A_TrvaMG_comp26581_c0_seq1
133bp
1858 O_TrvaMG13214_3prime_partial:A_TrvaMG_comp26581_c0_seq2
273bp
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0007548 P sex differentiation
GO:0046660 P female sex differentiation
GO:0048070 P regulation of developmental pigmentation
GO:0048071 P sex-specific pigmentation
GO:0048086 P negative regulation of developmental pigmentation
GO:0048092 P negative regulation of male pigmentation
1859 O_TrvaMG13215_complete:A_TrvaMG_comp26581_c0_seq3
351bp
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0019233 P sensory perception of pain
GO:0061040 P female gonad morphogenesis
1860 O_TrvaMG13216_3prime_partial:A_TrvaMG_comp26581_c0_seq4
273bp
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0007548 P sex differentiation
GO:0046660 P female sex differentiation
GO:0048070 P regulation of developmental pigmentation
GO:0048071 P sex-specific pigmentation
GO:0048086 P negative regulation of developmental pigmentation
GO:0048092 P negative regulation of male pigmentation
previous next from show/15605

- SilkBase 1999-2023 -