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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7171 O_TrvaFAMAMG2077_complete:A_TrvaFAMAMG_TR3159c0_g2_i1
985bp
PREDICTED:_superkiller_viralicidic_activity_2-like_2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
7172 O_TrvaFAMAMG20780_complete:A_TrvaFAMAMG_TR17469c0_g1_i1
591bp
PREDICTED:_serine/threonine-protein_phosphatase_PP2A_65_kDa_regulatory_subunit_[Papilio_polytes]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
7173 O_TrvaFAMAMG20781_complete:A_TrvaFAMAMG_TR17469c0_g1_i1
309bp
hypothetical_protein_THAOC_24290,_partial_[Thalassiosira_oceanica]
7174 O_TrvaFAMAMG20782_complete:A_TrvaFAMAMG_TR17469c0_g1_i1
303bp
NBS-LRR_type_resistance_protein_[Beta_vulgaris]
7175 O_TrvaFAMAMG20784_complete:A_TrvaFAMAMG_TR17469c0_g1_i2
591bp
PREDICTED:_serine/threonine-protein_phosphatase_PP2A_65_kDa_regulatory_subunit_[Papilio_polytes]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
7176 O_TrvaFAMAMG20785_complete:A_TrvaFAMAMG_TR17469c0_g1_i2
321bp
hypothetical_protein_THAOC_24290,_partial_[Thalassiosira_oceanica]
7177 O_TrvaFAMAMG20786_complete:A_TrvaFAMAMG_TR17469c0_g1_i2
303bp
NBS-LRR_type_resistance_protein_[Beta_vulgaris]
7178 O_TrvaFAMAMG20787_complete:A_TrvaFAMAMG_TR17469c0_g1_i3
591bp
PREDICTED:_serine/threonine-protein_phosphatase_PP2A_65_kDa_regulatory_subunit_[Papilio_polytes]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
7179 O_TrvaFAMAMG20788_complete:A_TrvaFAMAMG_TR17469c0_g1_i3
309bp
hypothetical_protein_THAOC_24290,_partial_[Thalassiosira_oceanica]
7180 O_TrvaFAMAMG20789_complete:A_TrvaFAMAMG_TR17469c0_g1_i3
303bp
NBS-LRR_type_resistance_protein_[Beta_vulgaris]
7181 O_TrvaFAMAMG20791_complete:A_TrvaFAMAMG_TR17469c0_g1_i4
591bp
PREDICTED:_serine/threonine-protein_phosphatase_PP2A_65_kDa_regulatory_subunit_[Papilio_polytes]
GO:0000159 C protein phosphatase type 2A complex
GO:0000775 C chromosome, centromeric region
GO:0003823 F antigen binding
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006461 P protein-containing complex assembly
GO:0007059 P chromosome segregation
GO:0007143 P female meiotic nuclear division
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046982 F protein heterodimerization activity
GO:0051232 P meiotic spindle elongation
GO:0051306 P mitotic sister chromatid separation
GO:0051754 P meiotic sister chromatid cohesion, centromeric
GO:0070062 C extracellular exosome
GO:0070262 P peptidyl-serine dephosphorylation
GO:1903538 P regulation of meiotic cell cycle process involved in oocyte maturation
GO:2001241 P positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
7182 O_TrvaFAMAMG20792_complete:A_TrvaFAMAMG_TR17469c0_g1_i4
321bp
hypothetical_protein_THAOC_24290,_partial_[Thalassiosira_oceanica]
7183 O_TrvaFAMAMG20793_complete:A_TrvaFAMAMG_TR17469c0_g1_i4
303bp
NBS-LRR_type_resistance_protein_[Beta_vulgaris]
7184 O_TrvaFAMAMG20794_complete:A_TrvaFAMAMG_TR17470c1_g1_i1
460bp
PREDICTED:_sodium/bile_acid_cotransporter_5-like_[Amyelois_transitella]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0008508 F bile acid:sodium symporter activity
GO:0010033 P response to organic substance
GO:0015293 F symporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032526 P response to retinoic acid
GO:0055085 P transmembrane transport
7185 O_TrvaFAMAMG20796_internal:A_TrvaFAMAMG_TR17470c2_g1_i1
227bp
hypothetical_protein_[Escherichia_coli]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
7186 O_TrvaFAMAMG20797_complete:A_TrvaFAMAMG_TR17471c0_g1_i1
895bp
PREDICTED:_transmembrane_and_TPR_repeat-containing_protein_CG4050_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
7187 O_TrvaFAMAMG20799_complete:A_TrvaFAMAMG_TR17472c0_g1_i1
1727bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
7188 O_TrvaFAMAMG20802_5prime_partial:A_TrvaFAMAMG_TR17472c0_g1_i2
309bp
PREDICTED:_protein_polybromo-1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
7189 O_TrvaFAMAMG20804_internal:A_TrvaFAMAMG_TR17472c0_g1_i3
153bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
7190 O_TrvaFAMAMG20805_3prime_partial:A_TrvaFAMAMG_TR17472c0_g1_i4
1571bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
7191 O_TrvaFAMAMG20807_complete:A_TrvaFAMAMG_TR17472c0_g1_i5
1718bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_polybromo-1_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007067 P mitotic cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0090544 C SWI/SNF superfamily-type complex
7192 O_TrvaFAMAMG2080_5prime_partial:A_TrvaFAMAMG_TR3163c0_g1_i1
287bp
PREDICTED:_brachyurin-like_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030574 P collagen catabolic process
7193 O_TrvaFAMAMG20811_complete:A_TrvaFAMAMG_TR17472c0_g1_i6
192bp
PREDICTED:_protein_polybromo-1_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
7194 O_TrvaFAMAMG20813_complete:A_TrvaFAMAMG_TR17473c0_g1_i1
1085bp
PREDICTED:_titin_isoform_X1_[Bombyx_mori]
7195 O_TrvaFAMAMG20814_complete:A_TrvaFAMAMG_TR17473c0_g1_i2
1021bp
PREDICTED:_titin_isoform_X2_[Bombyx_mori]
7196 O_TrvaFAMAMG20815_complete:A_TrvaFAMAMG_TR17473c0_g1_i3
1081bp
PREDICTED:_titin_isoform_X2_[Bombyx_mori]
7197 O_TrvaFAMAMG20816_complete:A_TrvaFAMAMG_TR17473c0_g1_i4
1081bp
PREDICTED:_titin_isoform_X2_[Bombyx_mori]
7198 O_TrvaFAMAMG20817_complete:A_TrvaFAMAMG_TR17473c0_g1_i5
1021bp
PREDICTED:_titin_isoform_X2_[Bombyx_mori]
7199 O_TrvaFAMAMG20818_complete:A_TrvaFAMAMG_TR17473c0_g1_i6
1085bp
PREDICTED:_titin_isoform_X1_[Bombyx_mori]
7200 O_TrvaFAMAMG20819_complete:A_TrvaFAMAMG_TR17473c0_g1_i7
1025bp
PREDICTED:_titin_isoform_X1_[Bombyx_mori]
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