Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
5491	O_TrvaFAMAMG18122_5prime_partial:A_TrvaFAMAMG_TR15449c0_g1_i1 149bp		PREDICTED:_DNA_polymerase_zeta_catalytic_subunit_isoform_X6_[Bombyx_mori]
5492	O_TrvaFAMAMG18123_5prime_partial:A_TrvaFAMAMG_TR15449c0_g2_i1 879bp		PREDICTED:_DNA_polymerase_zeta_catalytic_subunit_isoform_X4_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0008408 F 3'-5' exonuclease activity GO:0016035 C zeta DNA polymerase complex GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0042276 P error-prone translesion synthesis GO:0046872 F metal ion binding GO:0051536 F iron-sulfur cluster binding GO:0051539 F 4 iron, 4 sulfur cluster binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5493	O_TrvaFAMAMG18124_5prime_partial:A_TrvaFAMAMG_TR15449c0_g2_i2 996bp		PREDICTED:_DNA_polymerase_zeta_catalytic_subunit_isoform_X4_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003887 F DNA-directed DNA polymerase activity GO:0005634 C nucleus GO:0005730 C nucleolus GO:0006260 P DNA replication GO:0006281 P DNA repair GO:0006974 P cellular response to DNA damage stimulus GO:0008408 F 3'-5' exonuclease activity GO:0016035 C zeta DNA polymerase complex GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0019985 P translesion synthesis GO:0042276 P error-prone translesion synthesis GO:0046872 F metal ion binding GO:0051536 F iron-sulfur cluster binding GO:0051539 F 4 iron, 4 sulfur cluster binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5494	O_TrvaFAMAMG18125_complete:A_TrvaFAMAMG_TR15450c0_g1_i1 771bp		PREDICTED:_ATP-dependent_zinc_metalloprotease_YME1_homolog_[Amyelois_transitella]	GO:0000166 F nucleotide binding GO:0004176 F ATP-dependent peptidase activity GO:0004222 F metalloendopeptidase activity GO:0005524 F ATP binding GO:0005743 C mitochondrial inner membrane GO:0006508 P proteolysis GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins GO:0007005 P mitochondrion organization GO:0008233 F peptidase activity GO:0008237 F metallopeptidase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
5495	O_TrvaFAMAMG18128_complete:A_TrvaFAMAMG_TR15450c0_g1_i2 767bp		PREDICTED:_ATP-dependent_zinc_metalloprotease_YME1_homolog_[Amyelois_transitella]	GO:0000166 F nucleotide binding GO:0004176 F ATP-dependent peptidase activity GO:0004222 F metalloendopeptidase activity GO:0005524 F ATP binding GO:0005743 C mitochondrial inner membrane GO:0006508 P proteolysis GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins GO:0007005 P mitochondrion organization GO:0008233 F peptidase activity GO:0008237 F metallopeptidase activity GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016787 F hydrolase activity GO:0046872 F metal ion binding
5496	O_TrvaFAMAMG1812_3prime_partial:A_TrvaFAMAMG_TR2970c0_g2_i1 430bp		PREDICTED:_oxysterol-binding_protein-related_protein_6_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006810 P transport GO:0006869 P lipid transport GO:0008150 P biological_process GO:0008289 F lipid binding GO:0016020 C membrane GO:0031965 C nuclear membrane GO:0097038 C perinuclear endoplasmic reticulum
5497	O_TrvaFAMAMG18131_complete:A_TrvaFAMAMG_TR15452c0_g1_i1 299bp		Uncharacterized_protein_OBRU01_16734_[Operophtera_brumata]
5498	O_TrvaFAMAMG18132_complete:A_TrvaFAMAMG_TR15452c0_g1_i2 299bp		Uncharacterized_protein_OBRU01_16734_[Operophtera_brumata]
5499	O_TrvaFAMAMG18133_complete:A_TrvaFAMAMG_TR15452c0_g1_i3 299bp		Uncharacterized_protein_OBRU01_16734_[Operophtera_brumata]
5500	O_TrvaFAMAMG18134_complete:A_TrvaFAMAMG_TR15454c0_g1_i1 116bp		Arginyl-tRNA--protein_transferase_1_[Operophtera_brumata]	GO:0004057 F arginyltransferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0016598 P protein arginylation GO:0016740 F transferase activity GO:0016746 F acyltransferase activity
5501	O_TrvaFAMAMG18135_3prime_partial:A_TrvaFAMAMG_TR15454c0_g2_i1 217bp		PREDICTED:_arginyl-tRNA--protein_transferase_1_[Amyelois_transitella]	GO:0004057 F arginyltransferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0016598 P protein arginylation GO:0016740 F transferase activity GO:0016746 F acyltransferase activity
5502	O_TrvaFAMAMG18136_5prime_partial:A_TrvaFAMAMG_TR15454c0_g3_i1 326bp		PREDICTED:_arginyl-tRNA--protein_transferase_1_[Papilio_polytes]	GO:0004057 F arginyltransferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0016598 P protein arginylation GO:0016740 F transferase activity GO:0016746 F acyltransferase activity
5503	O_TrvaFAMAMG18137_complete:A_TrvaFAMAMG_TR15455c0_g1_i2 101bp		hypothetical_protein_KGM_10739_[Danaus_plexippus]
5504	O_TrvaFAMAMG18138_complete:A_TrvaFAMAMG_TR15456c0_g1_i1 549bp		PREDICTED:_organic_cation_transporter_protein-like_[Papilio_machaon]	GO:0005887 C integral component of plasma membrane GO:0006810 P transport GO:0006811 P ion transport GO:0006915 P apoptotic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0022857 F transmembrane transporter activity GO:0022891 F transmembrane transporter activity GO:0055085 P transmembrane transport
5505	O_TrvaFAMAMG18139_3prime_partial:A_TrvaFAMAMG_TR15477c0_g1_i1 190bp		PREDICTED:_uncharacterized_protein_LOC101744334_[Bombyx_mori]
5506	O_TrvaFAMAMG1813_3prime_partial:A_TrvaFAMAMG_TR2970c0_g2_i2 506bp		PREDICTED:_oxysterol-binding_protein-related_protein_6_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006810 P transport GO:0006869 P lipid transport GO:0008150 P biological_process GO:0008289 F lipid binding GO:0016020 C membrane GO:0031965 C nuclear membrane GO:0097038 C perinuclear endoplasmic reticulum
5507	O_TrvaFAMAMG18140_internal:A_TrvaFAMAMG_TR15493c0_g1_i1 100bp		ORF2_[Bombyx_mori]
5508	O_TrvaFAMAMG18141_internal:A_TrvaFAMAMG_TR15504c0_g1_i1 130bp		PREDICTED:_midasin_isoform_X1_[Bombyx_mori]	GO:0000027 P ribosomal large subunit assembly GO:0000166 F nucleotide binding GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006461 P protein-containing complex assembly GO:0008152 P metabolic process GO:0016020 C membrane GO:0016887 F ATP hydrolysis activity GO:0045111 C intermediate filament cytoskeleton GO:0051082 F unfolded protein binding
5509	O_TrvaFAMAMG18142_internal:A_TrvaFAMAMG_TR15509c0_g1_i1 132bp		PREDICTED:_uncharacterized_protein_LOC101739297_[Bombyx_mori]
5510	O_TrvaFAMAMG18143_3prime_partial:A_TrvaFAMAMG_TR15516c0_g1_i1 216bp		PREDICTED:_uncharacterized_protein_LOC101744317_isoform_X3_[Bombyx_mori]
5511	O_TrvaFAMAMG18144_5prime_partial:A_TrvaFAMAMG_TR15543c0_g1_i1 231bp		PREDICTED:_uncharacterized_protein_LOC101739091_isoform_X3_[Bombyx_mori]
5512	O_TrvaFAMAMG18145_5prime_partial:A_TrvaFAMAMG_TR15543c0_g2_i1 141bp		PREDICTED:_uncharacterized_protein_LOC101739091_isoform_X3_[Bombyx_mori]
5513	O_TrvaFAMAMG18146_complete:A_TrvaFAMAMG_TR15546c0_g1_i2 206bp		PREDICTED:_uncharacterized_protein_LOC106719267_[Papilio_machaon]
5514	O_TrvaFAMAMG18147_complete:A_TrvaFAMAMG_TR15547c0_g1_i1 136bp		PREDICTED:_uncharacterized_protein_LOC101746409_isoform_X2_[Bombyx_mori]
5515	O_TrvaFAMAMG18148_5prime_partial:A_TrvaFAMAMG_TR15556c0_g1_i1 133bp		PREDICTED:_uncharacterized_protein_LOC101745236_[Bombyx_mori]
5516	O_TrvaFAMAMG18149_complete:A_TrvaFAMAMG_TR15560c0_g1_i1 377bp		PREDICTED:_uncharacterized_protein_LOC106142086_[Amyelois_transitella]
5517	O_TrvaFAMAMG1814_3prime_partial:A_TrvaFAMAMG_TR2970c0_g2_i3 459bp		PREDICTED:_oxysterol-binding_protein-related_protein_6_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005737 C cytoplasm GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005829 C cytosol GO:0005886 C plasma membrane GO:0006810 P transport GO:0006869 P lipid transport GO:0008150 P biological_process GO:0008289 F lipid binding GO:0016020 C membrane GO:0031965 C nuclear membrane GO:0097038 C perinuclear endoplasmic reticulum
5518	O_TrvaFAMAMG18150_complete:A_TrvaFAMAMG_TR15560c0_g2_i1 422bp		PREDICTED:_uncharacterized_protein_LOC106142086_[Amyelois_transitella]
5519	O_TrvaFAMAMG18152_3prime_partial:A_TrvaFAMAMG_TR15566c1_g1_i1 103bp		PREDICTED:_leucine-rich_repeat-containing_protein_24-like_[Bombyx_mori]	GO:0005509 F calcium ion binding GO:0005576 C extracellular region GO:0030141 C secretory granule GO:0031549 P negative regulation of brain-derived neurotrophic factor receptor signaling pathway GO:0046872 F metal ion binding GO:0048403 F brain-derived neurotrophic factor binding GO:0048670 P regulation of collateral sprouting GO:0048671 P negative regulation of collateral sprouting GO:0061000 P negative regulation of dendritic spine development
5520	O_TrvaFAMAMG18153_complete:A_TrvaFAMAMG_TR15568c0_g1_i1 456bp		myeloid_zinc_finger_1_[Danaus_plexippus]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0046872 F metal ion binding