Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
4831	O_TrvaFAMAMG17191_internal:A_TrvaFAMAMG_TR14028c0_g1_i1 153bp		PREDICTED:_uncharacterized_protein_LOC105842244_[Bombyx_mori]
4832	O_TrvaFAMAMG17192_5prime_partial:A_TrvaFAMAMG_TR14035c0_g1_i1 185bp		Uncharacterized_protein_OBRU01_14001_[Operophtera_brumata]
4833	O_TrvaFAMAMG17193_5prime_partial:A_TrvaFAMAMG_TR14036c0_g1_i1 161bp		_putative_cuticle_protein_[Bombyx_mori]	GO:0042302 F structural constituent of cuticle
4834	O_TrvaFAMAMG17195_5prime_partial:A_TrvaFAMAMG_TR14043c0_g1_i1 107bp		hypothetical_protein_RR48_11955_[Papilio_machaon]
4835	O_TrvaFAMAMG17196_5prime_partial:A_TrvaFAMAMG_TR14052c0_g1_i1 340bp		PREDICTED:_integrin_alpha-PS4-like_[Bombyx_mori]
4836	O_TrvaFAMAMG17197_complete:A_TrvaFAMAMG_TR14061c0_g1_i1 339bp		PREDICTED:_uncharacterized_protein_C19orf47_homolog_[Papilio_xuthus]
4837	O_TrvaFAMAMG17200_internal:A_TrvaFAMAMG_TR14069c0_g1_i1 117bp		PREDICTED:_uncharacterized_protein_LOC105841266_[Bombyx_mori]
4838	O_TrvaFAMAMG17201_3prime_partial:A_TrvaFAMAMG_TR14078c0_g1_i1 179bp		PREDICTED:_leucine_carboxyl_methyltransferase_1_[Bombyx_mori]	GO:0005829 C cytosol GO:0006481 P C-terminal protein methylation GO:0008168 F methyltransferase activity GO:0016740 F transferase activity GO:0018423 F protein C-terminal leucine carboxyl O-methyltransferase activity GO:0032259 P methylation
4839	O_TrvaFAMAMG17205_3prime_partial:A_TrvaFAMAMG_TR14083c0_g1_i1 106bp		H2.0-like_homeobox_protein_[Papilio_xuthus]
4840	O_TrvaFAMAMG17206_3prime_partial:A_TrvaFAMAMG_TR14084c0_g1_i1 109bp		reverse_transcriptase_[Bombyx_mori]
4841	O_TrvaFAMAMG17208_complete:A_TrvaFAMAMG_TR14088c0_g1_i1 834bp		conserved_hypothetical_protein_[Glyptapanteles_indiensis]
4842	O_TrvaFAMAMG17209_internal:A_TrvaFAMAMG_TR14089c1_g1_i1 111bp		PREDICTED:_uncharacterized_protein_LOC106715505_[Papilio_machaon]
4843	O_TrvaFAMAMG1720_3prime_partial:A_TrvaFAMAMG_TR2922c0_g1_i1 467bp		PREDICTED:_tudor_domain-containing_protein_3-like_[Bombyx_mori]	GO:0003682 F chromatin binding GO:0003713 F transcription coactivator activity GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006397 P mRNA processing GO:0016568 P chromatin organization GO:0035064 F methylated histone binding GO:0035145 C exon-exon junction complex GO:1903506 P regulation of nucleic acid-templated transcription
4844	O_TrvaFAMAMG17213_5prime_partial:A_TrvaFAMAMG_TR14103c0_g1_i1 310bp		PREDICTED:_uncharacterized_protein_LOC105842253_isoform_X1_[Bombyx_mori]
4845	O_TrvaFAMAMG17214_internal:A_TrvaFAMAMG_TR14103c0_g1_i2 183bp		PREDICTED:_uncharacterized_protein_LOC105842253_isoform_X1_[Bombyx_mori]
4846	O_TrvaFAMAMG17215_5prime_partial:A_TrvaFAMAMG_TR14103c0_g2_i1 149bp		PREDICTED:_uncharacterized_protein_LOC105842253_isoform_X2_[Bombyx_mori]
4847	O_TrvaFAMAMG17216_5prime_partial:A_TrvaFAMAMG_TR14104c0_g2_i1 382bp		PREDICTED:_UDP-galactose_4-epimerase_isoform_X1_[Bombyx_mori]	GO:0003824 F catalytic activity GO:0003978 F UDP-glucose 4-epimerase activity GO:0005975 P carbohydrate metabolic process GO:0006012 P galactose metabolic process GO:0009243 P O antigen biosynthetic process GO:0016853 F isomerase activity GO:0050662 F obsolete coenzyme binding
4848	O_TrvaFAMAMG17217_internal:A_TrvaFAMAMG_TR14108c0_g1_i1 295bp		non-LTR_retrotransposon_CATS_[Bombyx_mori]	GO:0003676 F nucleic acid binding GO:0003964 F RNA-directed DNA polymerase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0006278 P RNA-dependent DNA biosynthetic process GO:0008152 P metabolic process GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4849	O_TrvaFAMAMG17219_3prime_partial:A_TrvaFAMAMG_TR14109c0_g1_i1 414bp		PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_15_[Bombyx_mori]	GO:0001104 F transcription coregulator activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006357 P regulation of transcription by RNA polymerase II GO:0016592 C mediator complex
4850	O_TrvaFAMAMG1721_complete:A_TrvaFAMAMG_TR2924c0_g1_i1 254bp		Short-chain_dehydrogenease/reductase_[Operophtera_brumata]	GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0055114 P obsolete oxidation-reduction process
4851	O_TrvaFAMAMG17221_5prime_partial:A_TrvaFAMAMG_TR14112c0_g1_i1 164bp		hypothetical_protein_KGM_01454_[Danaus_plexippus]
4852	O_TrvaFAMAMG17223_internal:A_TrvaFAMAMG_TR14112c0_g2_i1 124bp		hypothetical_protein_KGM_01454_[Danaus_plexippus]
4853	O_TrvaFAMAMG17225_complete:A_TrvaFAMAMG_TR14113c0_g1_i1 346bp		PREDICTED:_solute_carrier_family_35_member_G1_[Bombyx_mori]	GO:0005515 F protein binding GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0051480 P regulation of cytosolic calcium ion concentration GO:1990034 P calcium ion export across plasma membrane
4854	O_TrvaFAMAMG17227_complete:A_TrvaFAMAMG_TR14113c0_g2_i1 300bp		PREDICTED:_solute_carrier_family_35_member_G1_[Bombyx_mori]	GO:0005515 F protein binding GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0005886 C plasma membrane GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0051480 P regulation of cytosolic calcium ion concentration GO:1990034 P calcium ion export across plasma membrane
4855	O_TrvaFAMAMG17229_3prime_partial:A_TrvaFAMAMG_TR14116c0_g1_i1 140bp		PREDICTED:_microsomal_glutathione_S-transferase_1-like_[Bombyx_mori]	GO:0004364 F glutathione transferase activity GO:0004602 F glutathione peroxidase activity GO:0005634 C nucleus GO:0005739 C mitochondrion GO:0005741 C mitochondrial outer membrane GO:0005743 C mitochondrial inner membrane GO:0005778 C peroxisomal membrane GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006749 P glutathione metabolic process GO:0010243 P response to organonitrogen compound GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0032496 P response to lipopolysaccharide GO:0033327 P Leydig cell differentiation GO:0042493 P response to xenobiotic stimulus GO:0042802 F identical protein binding GO:0042803 F protein homodimerization activity GO:0043231 C intracellular membrane-bounded organelle GO:0043295 F glutathione binding GO:0045177 C apical part of cell GO:0055114 P obsolete oxidation-reduction process GO:0070207 P protein homotrimerization GO:0071449 P cellular response to lipid hydroperoxide GO:0098869 P cellular oxidant detoxification
4856	O_TrvaFAMAMG1722_complete:A_TrvaFAMAMG_TR2928c0_g1_i1 323bp		PREDICTED:_uncharacterized_protein_LOC105842364_[Bombyx_mori]
4857	O_TrvaFAMAMG17230_internal:A_TrvaFAMAMG_TR14118c0_g2_i1 175bp		PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]	GO:0000118 C histone deacetylase complex GO:0001701 P in utero embryonic development GO:0001780 P neutrophil homeostasis GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0005794 C Golgi apparatus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006915 P apoptotic process GO:0006954 P inflammatory response GO:0007275 P multicellular organism development GO:0009617 P response to bacterium GO:0009791 P post-embryonic development GO:0016235 C aggresome GO:0016607 C nuclear speck GO:0030154 P cell differentiation GO:0030900 P forebrain development GO:0035115 P embryonic forelimb morphogenesis GO:0035116 P embryonic hindlimb morphogenesis GO:0042127 P regulation of cell population proliferation GO:0042803 F protein homodimerization activity GO:0043069 P negative regulation of programmed cell death GO:0043231 C intracellular membrane-bounded organelle GO:0045892 P negative regulation of transcription, DNA-templated GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046329 P negative regulation of JNK cascade GO:0046872 F metal ion binding GO:0051726 P regulation of cell cycle GO:0060039 P pericardium development GO:0071425 P hematopoietic stem cell proliferation GO:0072001 P renal system development GO:0090336 P positive regulation of brown fat cell differentiation GO:0098727 P maintenance of cell number
4858	O_TrvaFAMAMG17231_5prime_partial:A_TrvaFAMAMG_TR14120c0_g1_i1 145bp		PREDICTED:_exportin-5_[Plutella_xylostella]	GO:0000049 F tRNA binding GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006611 P protein export from nucleus GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0008536 F small GTPase binding GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0031047 P gene silencing by RNA GO:0035281 P pre-miRNA export from nucleus GO:0042565 C RNA nuclear export complex GO:0044822 F RNA binding GO:0070883 F pre-miRNA binding GO:0090631 F nucleocytoplasmic carrier activity GO:1900370 P positive regulation of RNA interference
4859	O_TrvaFAMAMG17232_internal:A_TrvaFAMAMG_TR14121c0_g1_i1 522bp		PREDICTED:_midasin_isoform_X1_[Bombyx_mori]
4860	O_TrvaFAMAMG17233_internal:A_TrvaFAMAMG_TR14121c1_g1_i1 444bp		PREDICTED:_midasin_isoform_X1_[Bombyx_mori]	GO:0000027 P ribosomal large subunit assembly GO:0000166 F nucleotide binding GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006461 P protein-containing complex assembly GO:0008152 P metabolic process GO:0016020 C membrane GO:0016887 F ATP hydrolysis activity GO:0045111 C intermediate filament cytoskeleton GO:0051082 F unfolded protein binding