SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/15068
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5341 O_ErmoMG1828_internal:A_ErmoMG_comp21532_c0_seq1
125bp
PREDICTED:_class_E_vacuolar_protein-sorting_machinery_protein_hse1-like_isoform_X1_[Bombyx_mori]
5342 O_ErmoMG18290_complete:A_ErmoMG_comp37596_c0_seq1
412bp
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
5343 O_ErmoMG18291_complete:A_ErmoMG_comp37596_c0_seq1
397bp
5344 O_ErmoMG18294_complete:A_ErmoMG_comp37596_c0_seq2
826bp
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
5345 O_ErmoMG18297_internal:A_ErmoMG_comp37597_c0_seq1
157bp
5346 O_ErmoMG18298_internal:A_ErmoMG_comp37597_c3_seq1
188bp
5347 O_ErmoMG18299_internal:A_ErmoMG_comp37597_c3_seq2
109bp
5348 O_ErmoMG182_internal:A_ErmoMG_comp16754_c0_seq1
246bp
dicer_1,_partial_[Spodoptera_litura]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003727 F single-stranded RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0007279 P pole cell formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007367 P segment polarity determination
GO:0016246 P RNA interference
GO:0016442 C RISC complex
GO:0016443 F bidentate ribonuclease III activity
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0033227 P dsRNA transport
GO:0035087 P siRNA loading onto RISC involved in RNA interference
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042078 P germ-line stem cell division
GO:0042594 P response to starvation
GO:0045448 P mitotic cell cycle, embryonic
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0070883 F pre-miRNA binding
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
5349 O_ErmoMG18301_5prime_partial:A_ErmoMG_comp37597_c3_seq4
268bp
5350 O_ErmoMG18302_complete:A_ErmoMG_comp37597_c3_seq4
162bp
GO:0000226 P microtubule cytoskeleton organization
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007017 P microtubule-based process
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007528 P neuromuscular junction development
GO:0008017 F microtubule binding
GO:0008088 P axo-dendritic transport
GO:0008355 P olfactory learning
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0015630 C microtubule cytoskeleton
GO:0019900 F kinase binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0043025 C neuronal cell body
GO:0043524 P negative regulation of neuron apoptotic process
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0060052 P neurofilament cytoskeleton organization
GO:1901215 P negative regulation of neuron death
5351 O_ErmoMG18304_internal:A_ErmoMG_comp37597_c3_seq5
468bp
5352 O_ErmoMG18306_internal:A_ErmoMG_comp37597_c3_seq6
574bp
5353 O_ErmoMG18309_internal:A_ErmoMG_comp37597_c4_seq1
223bp
5354 O_ErmoMG1830_5prime_partial:A_ErmoMG_comp21532_c0_seq2
103bp
PREDICTED:_uncharacterized_protein_LOC101736580_isoform_X3_[Bombyx_mori]
5355 O_ErmoMG18310_internal:A_ErmoMG_comp37597_c5_seq1
283bp
5356 O_ErmoMG18311_5prime_partial:A_ErmoMG_comp37598_c0_seq1
509bp
GO:0001527 C microfibril
GO:0005201 F extracellular matrix structural constituent
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0030326 P embryonic limb morphogenesis
GO:0030501 P positive regulation of bone mineralization
GO:0031012 C extracellular matrix
GO:0035108 P limb morphogenesis
GO:0035583 P sequestering of TGFbeta in extracellular matrix
GO:0043010 P camera-type eye development
GO:0045669 P positive regulation of osteoblast differentiation
GO:0048048 P embryonic eye morphogenesis
GO:0060346 P bone trabecula formation
5357 O_ErmoMG18315_3prime_partial:A_ErmoMG_comp37599_c0_seq1
368bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
5358 O_ErmoMG18316_internal:A_ErmoMG_comp37599_c0_seq2
900bp
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
5359 O_ErmoMG18318_internal:A_ErmoMG_comp37599_c0_seq3
499bp
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
5360 O_ErmoMG1831_internal:A_ErmoMG_comp21541_c0_seq1
114bp
PREDICTED:_pentatricopeptide_repeat-containing_protein_1,_mitochondrial_isoform_X2_[Amyelois_transitella]
GO:0000049 F tRNA binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008033 P tRNA processing
GO:0042780 P tRNA 3'-end processing
5361 O_ErmoMG18320_5prime_partial:A_ErmoMG_comp37599_c0_seq4
152bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
5362 O_ErmoMG18321_5prime_partial:A_ErmoMG_comp37600_c0_seq1
240bp
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005254 F chloride channel activity
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0009268 P response to pH
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
5363 O_ErmoMG18322_3prime_partial:A_ErmoMG_comp37600_c0_seq2
567bp
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0009268 P response to pH
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
5364 O_ErmoMG18325_5prime_partial:A_ErmoMG_comp37600_c0_seq3
240bp
GO:0000166 F nucleotide binding
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005254 F chloride channel activity
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0009268 P response to pH
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1902476 P chloride transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
5365 O_ErmoMG18326_complete:A_ErmoMG_comp37601_c0_seq1
541bp
GO:0003824 F catalytic activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0007275 P multicellular organism development
GO:0007527 P adult somatic muscle development
GO:0008117 F sphinganine-1-phosphate aldolase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0019752 P carboxylic acid metabolic process
GO:0030149 P sphingolipid catabolic process
GO:0030170 F pyridoxal phosphate binding
GO:0046331 P lateral inhibition
5366 O_ErmoMG18328_complete:A_ErmoMG_comp37602_c0_seq1
520bp
GO:0003824 F catalytic activity
GO:0004035 F alkaline phosphatase activity
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
5367 O_ErmoMG1832_5prime_partial:A_ErmoMG_comp21551_c0_seq1
144bp
PREDICTED:_spindle_assembly_abnormal_protein_6_homolog_isoform_X2_[Bombyx_mori]
GO:0000280 P nuclear division
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007052 P mitotic spindle organization
GO:0007099 P centriole replication
GO:0007283 P spermatogenesis
GO:0040016 P embryonic cleavage
GO:0051298 P centrosome duplication
GO:0098536 C deuterosome
5368 O_ErmoMG18332_complete:A_ErmoMG_comp37602_c0_seq2
542bp
GO:0003824 F catalytic activity
GO:0004035 F alkaline phosphatase activity
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
5369 O_ErmoMG18334_complete:A_ErmoMG_comp37602_c0_seq3
521bp
GO:0003824 F catalytic activity
GO:0004035 F alkaline phosphatase activity
GO:0005886 C plasma membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
5370 O_ErmoMG18336_complete:A_ErmoMG_comp37603_c0_seq1
480bp
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
previous next from show/15068

- SilkBase 1999-2023 -