SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/15068
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4441 O_ErmoMG16928_5prime_partial:A_ErmoMG_comp37358_c0_seq5
104bp
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
4442 O_ErmoMG1692_5prime_partial:A_ErmoMG_comp20536_c0_seq1
320bp
PREDICTED:_aldo-keto_reductase_AKR2E4-like_[Papilio_machaon]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
4443 O_ErmoMG16931_internal:A_ErmoMG_comp37360_c0_seq1
592bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4444 O_ErmoMG16932_internal:A_ErmoMG_comp37360_c0_seq2
584bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4445 O_ErmoMG16934_3prime_partial:A_ErmoMG_comp37361_c2_seq1
191bp
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042981 P regulation of apoptotic process
GO:0044822 F RNA binding
4446 O_ErmoMG16936_internal:A_ErmoMG_comp37362_c0_seq1
1011bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006470 P protein dephosphorylation
GO:0006810 P transport
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019901 F protein kinase binding
GO:0030030 P cell projection organization
GO:0030334 P regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0060271 P cilium assembly
GO:0070062 C extracellular exosome
GO:1903387 P positive regulation of homophilic cell adhesion
GO:1903393 P positive regulation of adherens junction organization
GO:2000643 P positive regulation of early endosome to late endosome transport
4447 O_ErmoMG16938_internal:A_ErmoMG_comp37362_c0_seq2
545bp
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0006470 P protein dephosphorylation
GO:0006810 P transport
GO:0010633 P negative regulation of epithelial cell migration
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0019901 F protein kinase binding
GO:0030030 P cell projection organization
GO:0030334 P regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0036064 C ciliary basal body
GO:0042995 C cell projection
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0060271 P cilium assembly
GO:0070062 C extracellular exosome
GO:1903387 P positive regulation of homophilic cell adhesion
GO:1903393 P positive regulation of adherens junction organization
GO:2000643 P positive regulation of early endosome to late endosome transport
4448 O_ErmoMG16939_3prime_partial:A_ErmoMG_comp37362_c0_seq3
195bp
4449 O_ErmoMG1693_internal:A_ErmoMG_comp20554_c0_seq1
723bp
PREDICTED:_tyrosine-protein_kinase_Abl_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001764 P neuron migration
GO:0002009 P morphogenesis of an epithelium
GO:0003382 P epithelial cell morphogenesis
GO:0003402 P planar cell polarity pathway involved in axis elongation
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004715 F non-membrane spanning protein tyrosine kinase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0005927 C muscle tendon junction
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007370 P ventral furrow formation
GO:0007391 P dorsal closure
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007611 P learning or memory
GO:0008045 P motor neuron axon guidance
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008360 P regulation of cell shape
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010906 P regulation of glucose metabolic process
GO:0010977 P negative regulation of neuron projection development
GO:0016199 P axon midline choice point recognition
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019897 C extrinsic component of plasma membrane
GO:0021785 P branchiomotor neuron axon guidance
GO:0030424 C axon
GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane
GO:0031647 P regulation of protein stability
GO:0032880 P regulation of protein localization
GO:0038083 P peptidyl-tyrosine autophosphorylation
GO:0042127 P regulation of cell population proliferation
GO:0045087 P innate immune response
GO:0045179 C apical cortex
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046827 P positive regulation of protein export from nucleus
GO:0048749 P compound eye development
GO:0048813 P dendrite morphogenesis
GO:0070938 C contractile ring
GO:0072499 P photoreceptor cell axon guidance
4450 O_ErmoMG16940_complete:A_ErmoMG_comp37363_c0_seq1
628bp
GO:0002020 F protease binding
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005614 C interstitial matrix
GO:0006508 P proteolysis
GO:0006915 P apoptotic process
GO:0008233 F peptidase activity
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0043065 P positive regulation of apoptotic process
4451 O_ErmoMG16942_complete:A_ErmoMG_comp37364_c0_seq1
542bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0009166 P nucleotide catabolic process
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
4452 O_ErmoMG16943_complete:A_ErmoMG_comp37365_c1_seq1
504bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
4453 O_ErmoMG16945_complete:A_ErmoMG_comp37365_c1_seq2
504bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
4454 O_ErmoMG16947_3prime_partial:A_ErmoMG_comp37365_c1_seq4
516bp
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
4455 O_ErmoMG16949_3prime_partial:A_ErmoMG_comp37366_c0_seq1
654bp
GO:0001725 C stress fiber
GO:0001726 C ruffle
GO:0001891 C phagocytic cup
GO:0002102 C podosome
GO:0002286 P T cell activation involved in immune response
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0009611 P response to wounding
GO:0010737 P protein kinase A signaling
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0022617 P extracellular matrix disassembly
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0031100 P animal organ regeneration
GO:0032432 C actin filament bundle
GO:0032587 C ruffle membrane
GO:0033157 P regulation of intracellular protein transport
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0046872 F metal ion binding
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0051020 F GTPase binding
GO:0070062 C extracellular exosome
GO:0071803 P positive regulation of podosome assembly
4456 O_ErmoMG16950_complete:A_ErmoMG_comp37367_c0_seq1
437bp
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0006626 P protein targeting to mitochondrion
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030150 P protein import into mitochondrial matrix
GO:0051087 F chaperone binding
4457 O_ErmoMG16953_3prime_partial:A_ErmoMG_comp37368_c0_seq1
498bp
GO:0004177 F aminopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
4458 O_ErmoMG16954_5prime_partial:A_ErmoMG_comp37368_c1_seq1
199bp
GO:0004177 F aminopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
4459 O_ErmoMG16955_internal:A_ErmoMG_comp37368_c2_seq1
270bp
GO:0004177 F aminopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031225 C anchored component of membrane
GO:0046872 F metal ion binding
4460 O_ErmoMG16956_5prime_partial:A_ErmoMG_comp37369_c0_seq1
420bp
4461 O_ErmoMG16957_5prime_partial:A_ErmoMG_comp37370_c0_seq1
459bp
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0007175 P negative regulation of epidermal growth factor-activated receptor activity
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016050 P vesicle organization
GO:0016241 P regulation of macroautophagy
GO:0019898 C extrinsic component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030904 C retromer complex
GO:0030905 C retromer, tubulation complex
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0034452 F dynactin binding
GO:0035091 F phosphatidylinositol binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046982 F protein heterodimerization activity
GO:0097422 C tubular endosome
GO:1903593 P regulation of histamine secretion by mast cell
4462 O_ErmoMG16959_complete:A_ErmoMG_comp37372_c0_seq1
341bp
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4463 O_ErmoMG16961_complete:A_ErmoMG_comp37372_c0_seq2
398bp
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4464 O_ErmoMG16962_complete:A_ErmoMG_comp37372_c0_seq3
398bp
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4465 O_ErmoMG16963_complete:A_ErmoMG_comp37372_c0_seq4
398bp
GO:0003674 F molecular_function
GO:0005777 C peroxisome
GO:0007031 P peroxisome organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
4466 O_ErmoMG16964_5prime_partial:A_ErmoMG_comp37373_c1_seq1
316bp
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007050 P regulation of cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035019 P somatic stem cell population maintenance
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070911 P global genome nucleotide-excision repair
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:0097193 P intrinsic apoptotic signaling pathway
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
4467 O_ErmoMG16965_3prime_partial:A_ErmoMG_comp37373_c1_seq1
238bp
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008284 P positive regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035019 P somatic stem cell population maintenance
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
4468 O_ErmoMG16966_5prime_partial:A_ErmoMG_comp37373_c1_seq2
262bp
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008284 P positive regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035019 P somatic stem cell population maintenance
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
4469 O_ErmoMG16968_complete:A_ErmoMG_comp37373_c1_seq3
231bp
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0008284 P positive regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035019 P somatic stem cell population maintenance
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
4470 O_ErmoMG1696_internal:A_ErmoMG_comp20564_c0_seq1
101bp
PREDICTED:_dedicator_of_cytokinesis_protein_9_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0017048 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
previous next from show/15068

- SilkBase 1999-2023 -