SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/15068
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3931 O_ErmoMG16131_internal:A_ErmoMG_comp37198_c0_seq5
417bp
3932 O_ErmoMG16134_3prime_partial:A_ErmoMG_comp37198_c0_seq6
1177bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001162 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005791 C rough endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0008584 P male gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0014069 C postsynaptic density
GO:0015721 P bile acid and bile salt transport
GO:0016573 P histone acetylation
GO:0016922 F nuclear receptor binding
GO:0021549 P cerebellum development
GO:0030165 F PDZ domain binding
GO:0030331 F estrogen receptor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0030375 F obsolete thyroid hormone receptor coactivator activity
GO:0030425 C dendrite
GO:0030522 P intracellular receptor signaling pathway
GO:0032403 F protein-containing complex binding
GO:0032870 P cellular response to hormone stimulus
GO:0032922 P circadian regulation of gene expression
GO:0033142 F progesterone receptor binding
GO:0035257 F nuclear receptor binding
GO:0035259 F glucocorticoid receptor binding
GO:0042974 F retinoic acid receptor binding
GO:0043025 C neuronal cell body
GO:0043197 C dendritic spine
GO:0044255 P cellular lipid metabolic process
GO:0045475 P locomotor rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045925 P positive regulation of female receptivity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0048786 C presynaptic active zone
GO:0070182 F DNA polymerase binding
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
GO:2000273 P positive regulation of signaling receptor activity
GO:2000324 P positive regulation of glucocorticoid receptor signaling pathway
3933 O_ErmoMG16136_3prime_partial:A_ErmoMG_comp37198_c0_seq7
1137bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001162 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005791 C rough endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005874 C microtubule
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0008584 P male gonad development
GO:0010906 P regulation of glucose metabolic process
GO:0014069 C postsynaptic density
GO:0015721 P bile acid and bile salt transport
GO:0016573 P histone acetylation
GO:0016922 F nuclear receptor binding
GO:0021549 P cerebellum development
GO:0030165 F PDZ domain binding
GO:0030331 F estrogen receptor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0030375 F obsolete thyroid hormone receptor coactivator activity
GO:0030425 C dendrite
GO:0030522 P intracellular receptor signaling pathway
GO:0032403 F protein-containing complex binding
GO:0032870 P cellular response to hormone stimulus
GO:0032922 P circadian regulation of gene expression
GO:0033142 F progesterone receptor binding
GO:0035257 F nuclear receptor binding
GO:0035259 F glucocorticoid receptor binding
GO:0042974 F retinoic acid receptor binding
GO:0043025 C neuronal cell body
GO:0043197 C dendritic spine
GO:0044255 P cellular lipid metabolic process
GO:0045475 P locomotor rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045925 P positive regulation of female receptivity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046965 F retinoid X receptor binding
GO:0046966 F thyroid hormone receptor binding
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0048786 C presynaptic active zone
GO:0070182 F DNA polymerase binding
GO:1904017 P cellular response to Thyroglobulin triiodothyronine
GO:2000273 P positive regulation of signaling receptor activity
GO:2000324 P positive regulation of glucocorticoid receptor signaling pathway
3934 O_ErmoMG16138_internal:A_ErmoMG_comp37200_c1_seq1
350bp
GO:0003674 F molecular_function
GO:0006665 P sphingolipid metabolic process
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3935 O_ErmoMG16139_internal:A_ErmoMG_comp37200_c1_seq2
837bp
GO:0003674 F molecular_function
GO:0006665 P sphingolipid metabolic process
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3936 O_ErmoMG16140_complete:A_ErmoMG_comp37201_c0_seq1
1084bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0070742 F C2H2 zinc finger domain binding
GO:0071013 C catalytic step 2 spliceosome
3937 O_ErmoMG16144_3prime_partial:A_ErmoMG_comp37201_c0_seq2
126bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0070742 F C2H2 zinc finger domain binding
GO:0071013 C catalytic step 2 spliceosome
3938 O_ErmoMG16145_complete:A_ErmoMG_comp37203_c0_seq1
1126bp
GO:0001503 P ossification
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
3939 O_ErmoMG16147_complete:A_ErmoMG_comp37203_c0_seq2
1047bp
GO:0001503 P ossification
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005791 C rough endoplasmic reticulum
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030867 C rough endoplasmic reticulum membrane
GO:0032967 P positive regulation of collagen biosynthetic process
GO:0045669 P positive regulation of osteoblast differentiation
GO:0046850 P regulation of bone remodeling
3940 O_ErmoMG16149_complete:A_ErmoMG_comp37204_c6_seq1
317bp
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0031625 F ubiquitin protein ligase binding
GO:0061630 F ubiquitin protein ligase activity
3941 O_ErmoMG16151_complete:A_ErmoMG_comp37204_c10_seq1
516bp
GO:0003824 F catalytic activity
GO:0004021 F L-alanine:2-oxoglutarate aminotransferase activity
GO:0006103 P 2-oxoglutarate metabolic process
GO:0008483 F transaminase activity
GO:0009058 P biosynthetic process
GO:0016740 F transferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0042851 P L-alanine metabolic process
GO:0042853 P L-alanine catabolic process
3942 O_ErmoMG16153_complete:A_ErmoMG_comp37205_c0_seq1
1081bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3943 O_ErmoMG16154_complete:A_ErmoMG_comp37205_c0_seq1
562bp
GO:0046872 F metal ion binding
3944 O_ErmoMG16155_complete:A_ErmoMG_comp37205_c0_seq2
1081bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3945 O_ErmoMG16156_complete:A_ErmoMG_comp37205_c0_seq2
562bp
GO:0046872 F metal ion binding
3946 O_ErmoMG16157_internal:A_ErmoMG_comp37206_c1_seq1
490bp
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
3947 O_ErmoMG16158_complete:A_ErmoMG_comp37207_c0_seq2
238bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0030154 P cell differentiation
GO:0030318 P melanocyte differentiation
3948 O_ErmoMG16160_complete:A_ErmoMG_comp37207_c0_seq3
264bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0030154 P cell differentiation
GO:0030318 P melanocyte differentiation
3949 O_ErmoMG16162_5prime_partial:A_ErmoMG_comp37208_c0_seq1
206bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
3950 O_ErmoMG16163_5prime_partial:A_ErmoMG_comp37208_c0_seq2
445bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
3951 O_ErmoMG16165_internal:A_ErmoMG_comp37208_c0_seq3
315bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
3952 O_ErmoMG16167_3prime_partial:A_ErmoMG_comp37208_c0_seq4
102bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005875 C microtubule associated complex
GO:0006457 P protein folding
GO:0007052 P mitotic spindle organization
GO:0007430 P terminal branching, open tracheal system
GO:0042623 F ATP hydrolysis activity
GO:0051082 F unfolded protein binding
GO:0060439 P trachea morphogenesis
GO:0090307 P mitotic spindle assembly
3953 O_ErmoMG16168_5prime_partial:A_ErmoMG_comp37209_c0_seq1
467bp
3954 O_ErmoMG16169_internal:A_ErmoMG_comp37209_c0_seq2
118bp
3955 O_ErmoMG1616_internal:A_ErmoMG_comp20067_c0_seq1
198bp
PREDICTED:_centaurin-gamma-1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
3956 O_ErmoMG16170_internal:A_ErmoMG_comp37209_c0_seq3
208bp
3957 O_ErmoMG16171_5prime_partial:A_ErmoMG_comp37209_c0_seq4
469bp
3958 O_ErmoMG16172_5prime_partial:A_ErmoMG_comp37211_c0_seq1
504bp
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
3959 O_ErmoMG16174_5prime_partial:A_ErmoMG_comp37211_c0_seq2
187bp
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
3960 O_ErmoMG16175_complete:A_ErmoMG_comp37211_c0_seq3
447bp
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
previous next from show/15068

- SilkBase 1999-2023 -