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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5911 O_BomoSK15320_internal:A_BomoSK_comp13684_c0_seq7
135bp
 hypothetical_protein_RR48_08725_[Papilio_machaon]
5912 O_BomoSK15321_5prime_partial:A_BomoSK_comp13684_c0_seq7
113bp
 Protein_kinase_C-like_1B_[Trichinella_nativa]
5913 O_BomoSK15322_3prime_partial:A_BomoSK_comp13684_c0_seq8
1996bp
 PREDICTED:_transcriptional_regulator_ATRX_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
5914 O_BomoSK15323_complete:A_BomoSK_comp13684_c0_seq8
277bp
5915 O_BomoSK15324_complete:A_BomoSK_comp13684_c0_seq8
157bp
5916 O_BomoSK15325_5prime_partial:A_BomoSK_comp13684_c0_seq8
149bp
 Protein_kinase_C-like_1B_[Trichinella_nativa]
5917 O_BomoSK15326_complete:A_BomoSK_comp13684_c0_seq8
135bp
 Uncharacterised_protein_[Chlamydia_trachomatis]
5918 O_BomoSK15327_complete:A_BomoSK_comp13684_c0_seq8
111bp
 ornithine_acetyltransferase_[Rhodococcus_fascians]
5919 O_BomoSK15328_3prime_partial:A_BomoSK_comp13684_c0_seq9
1991bp
 PREDICTED:_transcriptional_regulator_ATRX_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
5920 O_BomoSK15329_complete:A_BomoSK_comp13684_c0_seq9
277bp
5921 O_BomoSK1532_3prime_partial:A_BomoSK_comp4340_c0_seq1
221bp
 PREDICTED:_protein_hook_[Papilio_machaon]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006897 P endocytosis
GO:0008017 F microtubule binding
GO:0030705 P cytoskeleton-dependent intracellular transport
5922 O_BomoSK15330_complete:A_BomoSK_comp13684_c0_seq9
157bp
5923 O_BomoSK15331_5prime_partial:A_BomoSK_comp13684_c0_seq9
144bp
 Protein_kinase_C-like_1B_[Trichinella_nativa]
5924 O_BomoSK15332_complete:A_BomoSK_comp13684_c0_seq9
135bp
 Uncharacterised_protein_[Chlamydia_trachomatis]
5925 O_BomoSK15333_complete:A_BomoSK_comp13684_c0_seq9
111bp
 ornithine_acetyltransferase_[Rhodococcus_fascians]
5926 O_BomoSK15334_complete:A_BomoSK_comp13685_c0_seq1
535bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5927 O_BomoSK15335_complete:A_BomoSK_comp13685_c0_seq2
555bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5928 O_BomoSK15336_complete:A_BomoSK_comp13685_c0_seq3
286bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5929 O_BomoSK15337_complete:A_BomoSK_comp13685_c0_seq4
437bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5930 O_BomoSK15338_complete:A_BomoSK_comp13685_c0_seq5
384bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5931 O_BomoSK15339_complete:A_BomoSK_comp13685_c0_seq6
457bp
 nuclear_hormone_receptor_FTZ-F1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
5932 O_BomoSK1533_3prime_partial:A_BomoSK_comp4341_c0_seq1
121bp
 PREDICTED:_uncharacterized_protein_LOC101736348_[Bombyx_mori]
5933 O_BomoSK15340_complete:A_BomoSK_comp13686_c1_seq1
188bp
 SEC14-like_protein_2,_partial_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005215 F transporter activity
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0016021 C integral component of membrane
5934 O_BomoSK15341_complete:A_BomoSK_comp13686_c1_seq1
106bp
 PREDICTED:_SEC14-like_protein_2_[Papilio_xuthus]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0008047 F enzyme activator activity
GO:0008289 F lipid binding
GO:0016021 C integral component of membrane
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0043085 P positive regulation of catalytic activity
GO:0045542 P positive regulation of cholesterol biosynthetic process
5935 O_BomoSK15342_complete:A_BomoSK_comp13686_c1_seq2
409bp
 PREDICTED:_SEC14-like_protein_2_[Papilio_machaon]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0008047 F enzyme activator activity
GO:0008289 F lipid binding
GO:0016021 C integral component of membrane
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0043085 P positive regulation of catalytic activity
GO:0045542 P positive regulation of cholesterol biosynthetic process
5936 O_BomoSK15343_complete:A_BomoSK_comp13686_c1_seq2
127bp
 PREDICTED:_thioredoxin_domain-containing_protein_17-like_isoform_X1_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0047134 F protein-disulfide reductase (NAD(P)) activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0098869 P cellular oxidant detoxification
5937 O_BomoSK15344_complete:A_BomoSK_comp13686_c1_seq2
109bp
 alcohol_dehydrogenase_[Marinomonas_posidonica]
5938 O_BomoSK15345_complete:A_BomoSK_comp13686_c1_seq3
312bp
 PREDICTED:_SEC14-like_protein_2_[Papilio_machaon]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0008047 F enzyme activator activity
GO:0008289 F lipid binding
GO:0016021 C integral component of membrane
GO:0016765 F transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0043085 P positive regulation of catalytic activity
GO:0045542 P positive regulation of cholesterol biosynthetic process
5939 O_BomoSK15346_complete:A_BomoSK_comp13686_c1_seq3
109bp
 alcohol_dehydrogenase_[Marinomonas_posidonica]
5940 O_BomoSK15347_complete:A_BomoSK_comp13686_c1_seq4
101bp
 CRAL/TRIO_domain-containing_protein,_partial_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005215 F transporter activity
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0016021 C integral component of membrane
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