SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4621 O_BomoSK1415_complete:A_BomoSK_comp4191_c0_seq1
1191bp
 hypothetical_protein_KGM_20555_[Danaus_plexippus]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005759 C mitochondrial matrix
GO:0005813 C centrosome
GO:0005886 C plasma membrane
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006301 P postreplication repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007098 P centrosome cycle
GO:0007420 P brain development
GO:0007584 P response to nutrient
GO:0008270 F zinc ion binding
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009048 P dosage compensation by inactivation of X chromosome
GO:0010033 P response to organic substance
GO:0010212 P response to ionizing radiation
GO:0010575 P positive regulation of vascular endothelial growth factor production
GO:0010628 P positive regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0031052 P chromosome breakage
GO:0031398 P positive regulation of protein ubiquitination
GO:0031436 C BRCA1-BARD1 complex
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031625 F ubiquitin protein ligase binding
GO:0032355 P response to estradiol
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0033160 P obsolete positive regulation of protein import into nucleus, translocation
GO:0033993 P response to lipid
GO:0035066 P positive regulation of histone acetylation
GO:0035067 P negative regulation of histone acetylation
GO:0042127 P regulation of cell population proliferation
GO:0043009 P chordate embryonic development
GO:0043234 C protein-containing complex
GO:0043627 P response to estrogen
GO:0044030 P regulation of DNA methylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045717 P negative regulation of fatty acid biosynthetic process
GO:0045739 P positive regulation of DNA repair
GO:0045766 P positive regulation of angiogenesis
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051298 P centrosome duplication
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0051572 P negative regulation of histone H3-K4 methylation
GO:0051573 P negative regulation of histone H3-K9 methylation
GO:0051574 P positive regulation of histone H3-K9 methylation
GO:0051865 P protein autoubiquitination
GO:0070512 P positive regulation of histone H4-K20 methylation
GO:0070531 C BRCA1-A complex
GO:0071158 P regulation of cell cycle
GO:0071356 P cellular response to tumor necrosis factor
GO:0071681 P cellular response to indole-3-methanol
GO:0085020 P protein K6-linked ubiquitination
GO:1902042 P negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000378 P negative regulation of reactive oxygen species metabolic process
GO:2000617 P positive regulation of histone H3-K9 acetylation
GO:2000620 P positive regulation of histone H4-K16 acetylation
4622 O_BomoSK14160_complete:A_BomoSK_comp13478_c0_seq2
267bp
 PREDICTED:_uncharacterized_protein_LOC101743189_isoform_X2_[Bombyx_mori]
4623 O_BomoSK14161_complete:A_BomoSK_comp13478_c0_seq2
240bp
 sugar_ABC_transporter_ATP-binding_protein_[Carnobacterium_gallinarum]
4624 O_BomoSK14162_complete:A_BomoSK_comp13478_c0_seq2
155bp
 hypothetical_protein_RR48_14247,_partial_[Papilio_machaon]
4625 O_BomoSK14163_complete:A_BomoSK_comp13478_c0_seq2
110bp
 predicted_protein_[Aspergillus_terreus_NIH2624]
4626 O_BomoSK14164_complete:A_BomoSK_comp13479_c0_seq1
2683bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743303_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0016020 C membrane
GO:0031225 C anchored component of membrane
GO:0031514 C motile cilium
GO:0042995 C cell projection
4627 O_BomoSK14165_complete:A_BomoSK_comp13479_c0_seq2
2619bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101743303_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0016020 C membrane
GO:0031225 C anchored component of membrane
GO:0031514 C motile cilium
GO:0042995 C cell projection
4628 O_BomoSK14166_complete:A_BomoSK_comp13480_c0_seq1
3852bp
 PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein_isoform_X9_[Papilio_machaon]
GO:0001525 P angiogenesis
GO:0001958 P endochondral ossification
GO:0002020 F protease binding
GO:0002062 P chondrocyte differentiation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0007420 P brain development
GO:0008022 F protein C-terminus binding
GO:0008104 P protein localization
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0046872 F metal ion binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048738 P cardiac muscle tissue development
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
GO:0070062 C extracellular exosome
4629 O_BomoSK14167_complete:A_BomoSK_comp13480_c0_seq1
168bp
 cell_cycle_protein_FtsW/RodA/SpoVE_family_[Prevotella_sp._CAG:617]
4630 O_BomoSK14168_complete:A_BomoSK_comp13480_c0_seq1
135bp
 RT09817p_[Drosophila_melanogaster]
4631 O_BomoSK14169_complete:A_BomoSK_comp13480_c0_seq1
130bp
 conserved_hypothetical_protein,_fragment,_partial_[Trypanosoma_vivax_Y486]
4632 O_BomoSK1416_complete:A_BomoSK_comp4196_c0_seq1
503bp
 PREDICTED:_scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001618 F virus receptor activity
GO:0001786 F phosphatidylserine binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006702 P androgen biosynthetic process
GO:0006707 P cholesterol catabolic process
GO:0006869 P lipid transport
GO:0006898 P receptor-mediated endocytosis
GO:0006910 P phagocytosis, recognition
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0030666 C endocytic vesicle membrane
GO:0031528 C microvillus membrane
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042060 P wound healing
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0046718 P viral entry into host cell
GO:0050764 P regulation of phagocytosis
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
4633 O_BomoSK14170_complete:A_BomoSK_comp13480_c0_seq1
130bp
 iS4_family_transposase_ORF_2_[Acinetobacter_baumannii_1397084]
4634 O_BomoSK14171_complete:A_BomoSK_comp13480_c0_seq1
129bp
4635 O_BomoSK14172_complete:A_BomoSK_comp13480_c0_seq1
119bp
4636 O_BomoSK14173_complete:A_BomoSK_comp13480_c0_seq1
113bp
 predicted_protein_[Hordeum_vulgare_subsp._vulgare]
4637 O_BomoSK14174_complete:A_BomoSK_comp13480_c0_seq1
105bp
4638 O_BomoSK14175_complete:A_BomoSK_comp13480_c0_seq2
3906bp
 PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X3_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
4639 O_BomoSK14176_complete:A_BomoSK_comp13480_c0_seq2
149bp
 methionine_ABC_transporter_substrate-binding_protein_[Jeotgalibacillus_soli_Cunha_et_al._2012]
4640 O_BomoSK14177_complete:A_BomoSK_comp13480_c0_seq2
135bp
 RT09817p_[Drosophila_melanogaster]
4641 O_BomoSK14178_complete:A_BomoSK_comp13480_c0_seq2
130bp
 conserved_hypothetical_protein,_fragment,_partial_[Trypanosoma_vivax_Y486]
4642 O_BomoSK14179_complete:A_BomoSK_comp13480_c0_seq2
130bp
 iS4_family_transposase_ORF_2_[Acinetobacter_baumannii_1397084]
4643 O_BomoSK1417_complete:A_BomoSK_comp4196_c0_seq2
503bp
 PREDICTED:_scavenger_receptor_class_B_member_1-like_isoform_X1_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001618 F virus receptor activity
GO:0001786 F phosphatidylserine binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006702 P androgen biosynthetic process
GO:0006707 P cholesterol catabolic process
GO:0006869 P lipid transport
GO:0006898 P receptor-mediated endocytosis
GO:0006910 P phagocytosis, recognition
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016032 P viral process
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0030666 C endocytic vesicle membrane
GO:0031528 C microvillus membrane
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042060 P wound healing
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0046718 P viral entry into host cell
GO:0050764 P regulation of phagocytosis
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
4644 O_BomoSK14180_complete:A_BomoSK_comp13480_c0_seq2
129bp
4645 O_BomoSK14181_complete:A_BomoSK_comp13480_c0_seq2
119bp
4646 O_BomoSK14182_complete:A_BomoSK_comp13480_c0_seq2
113bp
 predicted_protein_[Hordeum_vulgare_subsp._vulgare]
4647 O_BomoSK14183_complete:A_BomoSK_comp13480_c0_seq2
105bp
4648 O_BomoSK14184_3prime_partial:A_BomoSK_comp13480_c0_seq3
814bp
 PREDICTED:_uncharacterized_protein_LOC101745012_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043235 C receptor complex
GO:0050750 F low-density lipoprotein particle receptor binding
4649 O_BomoSK14185_complete:A_BomoSK_comp13480_c0_seq3
105bp
4650 O_BomoSK14186_3prime_partial:A_BomoSK_comp13480_c0_seq4
850bp
 PREDICTED:_uncharacterized_protein_LOC101745012_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043235 C receptor complex
GO:0050750 F low-density lipoprotein particle receptor binding
previous next from show/33939

- SilkBase 1999-2023 -