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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3151 O_BomoSK12837_3prime_partial:A_BomoSK_comp13095_c0_seq4
608bp
 Uncharacterized_protein_OBRU01_16110,_partial_[Operophtera_brumata]
3152 O_BomoSK12838_5prime_partial:A_BomoSK_comp13095_c0_seq4
103bp
 hypothetical_protein_Z518_06075_[Rhinocladiella_mackenziei_CBS_650.93]
3153 O_BomoSK12839_complete:A_BomoSK_comp13095_c0_seq4
103bp
 dynein,_axonemal,_heavy_chain_11_[synthetic_construct]
3154 O_BomoSK1283_complete:A_BomoSK_comp4060_c0_seq1
438bp
 PREDICTED:_histone_deacetylase_3_[Bombyx_mori]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003682 F chromatin binding
GO:0003714 F transcription corepressor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0017053 C transcription repressor complex
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0070491 F DNA-binding transcription factor binding
GO:0070932 P histone H3 deacetylation
3155 O_BomoSK12840_complete:A_BomoSK_comp13096_c0_seq1
1126bp
 alpha-mannosidase_II_[Spodoptera_frugiperda]
GO:0000139 C Golgi membrane
GO:0001701 P in utero embryonic development
GO:0001889 P liver development
GO:0003824 F catalytic activity
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004559 F alpha-mannosidase activity
GO:0004572 F mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0005975 P carbohydrate metabolic process
GO:0006013 P mannose metabolic process
GO:0006486 P protein glycosylation
GO:0006491 P N-glycan processing
GO:0007005 P mitochondrion organization
GO:0007033 P vacuole organization
GO:0007585 P respiratory gaseous exchange by respiratory system
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0015923 F mannosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016799 F hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
GO:0048286 P lung alveolus development
GO:0050769 P positive regulation of neurogenesis
GO:0060042 P retina morphogenesis in camera-type eye
GO:0070062 C extracellular exosome
3156 O_BomoSK12841_complete:A_BomoSK_comp13097_c0_seq1
262bp
 RNA_binding_region_containing_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0008380 P RNA splicing
GO:0030154 P cell differentiation
3157 O_BomoSK12842_complete:A_BomoSK_comp13097_c0_seq1
139bp
 glyceraldehyde-3-phosphate_dehydrogenase_GAPDH1_[Toxoplasma_gondii_VAND]
3158 O_BomoSK12843_5prime_partial:A_BomoSK_comp13097_c0_seq1
128bp
 uncharacterized_protein_Dana_GF25136_[Drosophila_ananassae]
3159 O_BomoSK12844_complete:A_BomoSK_comp13097_c0_seq2
142bp
 RNA_binding_region_containing_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0010830 P regulation of myotube differentiation
GO:0030154 P cell differentiation
GO:0043488 P regulation of mRNA stability
3160 O_BomoSK12845_5prime_partial:A_BomoSK_comp13097_c0_seq2
128bp
 uncharacterized_protein_Dana_GF25136_[Drosophila_ananassae]
3161 O_BomoSK12846_3prime_partial:A_BomoSK_comp13098_c0_seq1
260bp
 PREDICTED:_general_transcription_factor_IIE_subunit_1_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
3162 O_BomoSK12847_complete:A_BomoSK_comp13098_c0_seq2
246bp
 PREDICTED:_rab-like_protein_3_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
3163 O_BomoSK12848_3prime_partial:A_BomoSK_comp13099_c0_seq1
546bp
 PREDICTED:_eukaryotic_translation_initiation_factor_3_subunit_A_[Amyelois_transitella]
GO:0001731 P formation of translation preinitiation complex
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0033290 C eukaryotic 48S preinitiation complex
3164 O_BomoSK12849_5prime_partial:A_BomoSK_comp13099_c0_seq1
134bp
3165 O_BomoSK1284_complete:A_BomoSK_comp4060_c0_seq1
113bp
 hypothetical_protein_[Dermacoccus_sp._PE3]
3166 O_BomoSK12850_5prime_partial:A_BomoSK_comp13099_c0_seq1
125bp
 transcriptional_regulator_TetR_family_[Clostridium_sp._CAG:710]
3167 O_BomoSK12851_complete:A_BomoSK_comp13100_c0_seq1
208bp
 PREDICTED:_kxDL_motif-containing_protein_CG10681_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
3168 O_BomoSK12852_5prime_partial:A_BomoSK_comp13103_c0_seq1
531bp
 PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
3169 O_BomoSK12853_5prime_partial:A_BomoSK_comp13105_c0_seq1
115bp
 putative_glycosylphosphatidylinositol-specific_phospholipase_C,_partial_[Operophtera_brumata]
3170 O_BomoSK12854_3prime_partial:A_BomoSK_comp13105_c0_seq1
100bp
 hypothetical_protein_[Comamonas_sp._B-9]
3171 O_BomoSK12855_complete:A_BomoSK_comp13106_c0_seq1
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3172 O_BomoSK12856_complete:A_BomoSK_comp13106_c0_seq2
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3173 O_BomoSK12857_complete:A_BomoSK_comp13106_c0_seq2
104bp
 PREDICTED:_pentatricopeptide_repeat-containing_protein_At3g54980,_mitochondrial-like_[Nicotiana_tomentosiformis]
3174 O_BomoSK12858_complete:A_BomoSK_comp13106_c0_seq3
257bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3175 O_BomoSK12859_complete:A_BomoSK_comp13106_c0_seq3
103bp
 hypothetical_protein_LPMP_204520_[Leishmania_panamensis]
3176 O_BomoSK1285_3prime_partial:A_BomoSK_comp4061_c0_seq1
355bp
 PREDICTED:_AT-rich_interactive_domain-containing_protein_5B-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0044212 F transcription cis-regulatory region binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
3177 O_BomoSK12860_complete:A_BomoSK_comp13107_c0_seq2
1254bp
 PREDICTED:_helicase_SKI2W_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006401 P RNA catabolic process
GO:0016787 F hydrolase activity
GO:0055087 C Ski complex
3178 O_BomoSK12861_complete:A_BomoSK_comp13107_c0_seq2
125bp
 hypothetical_protein_FR483_n230R_[Paramecium_bursaria_Chlorella_virus_FR483]
3179 O_BomoSK12862_complete:A_BomoSK_comp13107_c0_seq2
114bp
 hypothetical_protein_ATCV1_z599L_[Acanthocystis_turfacea_Chlorella_virus_1]
3180 O_BomoSK12863_3prime_partial:A_BomoSK_comp13108_c0_seq1
102bp
 PREDICTED:_ell-associated_factor_Eaf_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0032783 C super elongation complex
GO:0045893 P positive regulation of transcription, DNA-templated
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