SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3091 O_BomoSK12783_complete:A_BomoSK_comp13079_c0_seq1
638bp
 PREDICTED:_glutaredoxin_domain-containing_cysteine-rich_protein_CG31559-like_[Amyelois_transitella]
GO:0005575 C cellular_component
GO:0005623 C obsolete cell
GO:0008150 P biological_process
GO:0009055 F electron transfer activity
GO:0015035 F protein-disulfide reductase activity
GO:0045454 P cell redox homeostasis
GO:0055114 P obsolete oxidation-reduction process
3092 O_BomoSK12784_complete:A_BomoSK_comp13079_c0_seq1
128bp
3093 O_BomoSK12785_5prime_partial:A_BomoSK_comp13081_c0_seq1
571bp
 PREDICTED:_protein_arginine_N-methyltransferase_5_isoform_X1_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0007088 P regulation of mitotic nuclear division
GO:0008168 F methyltransferase activity
GO:0008283 P cell population proliferation
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032403 F protein-containing complex binding
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035097 C histone methyltransferase complex
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043021 F ribonucleoprotein complex binding
GO:0043234 C protein-containing complex
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0044030 P regulation of DNA methylation
GO:0045596 P negative regulation of cell differentiation
GO:0046982 F protein heterodimerization activity
GO:0048511 P rhythmic process
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0070372 P regulation of ERK1 and ERK2 cascade
GO:0090161 P Golgi ribbon formation
GO:0097421 P liver regeneration
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1903507 P negative regulation of nucleic acid-templated transcription
GO:1904992 P positive regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway
3094 O_BomoSK12786_complete:A_BomoSK_comp13081_c0_seq1
150bp
 orotidine_5'-phosphate_decarboxylase_[Caldithrix_abyssi]
3095 O_BomoSK12787_5prime_partial:A_BomoSK_comp13081_c0_seq2
245bp
 PREDICTED:_protein_arginine_N-methyltransferase_5_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0048511 P rhythmic process
GO:0090161 P Golgi ribbon formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
3096 O_BomoSK12788_3prime_partial:A_BomoSK_comp13081_c0_seq3
110bp
 PREDICTED:_protein_arginine_N-methyltransferase_5_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008327 F methyl-CpG binding
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0048511 P rhythmic process
GO:0090161 P Golgi ribbon formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
3097 O_BomoSK12789_5prime_partial:A_BomoSK_comp13082_c0_seq1
279bp
 PREDICTED:_PIH1_domain-containing_protein_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
3098 O_BomoSK1278_complete:A_BomoSK_comp4059_c0_seq1
562bp
 PREDICTED:_peritrophin-48-like_[Amyelois_transitella]
GO:0005576 C extracellular region
GO:0006030 P chitin metabolic process
GO:0008061 F chitin binding
3099 O_BomoSK12790_complete:A_BomoSK_comp13082_c0_seq2
302bp
 PREDICTED:_PIH1_domain-containing_protein_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
3100 O_BomoSK12791_5prime_partial:A_BomoSK_comp13082_c0_seq3
226bp
 PREDICTED:_PIH1_domain-containing_protein_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
3101 O_BomoSK12792_complete:A_BomoSK_comp13082_c0_seq4
249bp
 PREDICTED:_PIH1_domain-containing_protein_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
3102 O_BomoSK12793_5prime_partial:A_BomoSK_comp13083_c0_seq1
296bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3103 O_BomoSK12794_5prime_partial:A_BomoSK_comp13083_c0_seq4
296bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
3104 O_BomoSK12795_3prime_partial:A_BomoSK_comp13084_c0_seq2
170bp
 PREDICTED:_la-related_protein_1_[Bombyx_mori]
3105 O_BomoSK12796_5prime_partial:A_BomoSK_comp13084_c0_seq2
144bp
 PREDICTED:_amyloid_beta_A4_precursor_protein-binding_family_A_member_1-like_isoform_X3_[Salmo_salar]
3106 O_BomoSK12797_5prime_partial:A_BomoSK_comp13084_c0_seq2
141bp
 PREDICTED:_integrator_complex_subunit_10_[Acinonyx_jubatus]
3107 O_BomoSK12798_3prime_partial:A_BomoSK_comp13084_c0_seq4
166bp
 PREDICTED:_la-related_protein_1_[Bombyx_mori]
3108 O_BomoSK12799_5prime_partial:A_BomoSK_comp13084_c0_seq4
140bp
 PREDICTED:_amyloid_beta_A4_precursor_protein-binding_family_A_member_1-like_isoform_X3_[Salmo_salar]
3109 O_BomoSK1279_complete:A_BomoSK_comp4059_c0_seq1
201bp
 PREDICTED:_uncharacterized_protein_LOC103314049_isoform_X2_[Tribolium_castaneum]
3110 O_BomoSK127_5prime_partial:A_BomoSK_comp410_c1_seq1
140bp
 type_I_polyketide_synthase_[Bradyrhizobium_japonicum]
3111 O_BomoSK12800_5prime_partial:A_BomoSK_comp13084_c0_seq4
137bp
 hypothetical_protein_FOIG_15781_[Fusarium_oxysporum_f._sp._cubense_tropical_race_4_54006]
3112 O_BomoSK12801_complete:A_BomoSK_comp13085_c0_seq1
612bp
 PREDICTED:_pescadillo_homolog_[Bombyx_mori]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
3113 O_BomoSK12802_5prime_partial:A_BomoSK_comp13086_c1_seq1
620bp
 PREDICTED:_uncharacterized_protein_LOC101743410_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
3114 O_BomoSK12803_complete:A_BomoSK_comp13086_c1_seq1
128bp
 hypothetical_protein_MYCGRDRAFT_77869_[Zymoseptoria_tritici_IPO323]
3115 O_BomoSK12804_complete:A_BomoSK_comp13086_c1_seq1
108bp
3116 O_BomoSK12805_5prime_partial:A_BomoSK_comp13086_c1_seq3
574bp
 PREDICTED:_uncharacterized_protein_LOC101743410_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
3117 O_BomoSK12806_complete:A_BomoSK_comp13086_c1_seq3
128bp
 hypothetical_protein_MYCGRDRAFT_77869_[Zymoseptoria_tritici_IPO323]
3118 O_BomoSK12807_complete:A_BomoSK_comp13088_c0_seq1
889bp
 tudor_staphylococcus/micrococcal_nuclease_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016442 C RISC complex
GO:0031047 P gene silencing by RNA
GO:0042470 C melanosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3119 O_BomoSK12808_complete:A_BomoSK_comp13088_c0_seq1
117bp
 putative_protein_YEL023C_OS=Saccharomyces_cerevisiae_(strain_ATCC_204508_/_S288c)_GN=YEL023C_PE=4_SV=1_[Rhizoctonia_solani_AG-1_IB]
3120 O_BomoSK12809_complete:A_BomoSK_comp13088_c0_seq3
862bp
 tudor_staphylococcus/micrococcal_nuclease_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016442 C RISC complex
GO:0031047 P gene silencing by RNA
GO:0042470 C melanosome
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097433 C dense body
previous next from show/33939

- SilkBase 1999-2023 -