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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2821 O_BomoSK1253_internal:A_BomoSK_comp4042_c0_seq1
159bp
 PREDICTED:_probable_3',5'-cyclic_phosphodiesterase_pde-5_isoform_X1_[Amyelois_transitella]
2822 O_BomoSK12540_complete:A_BomoSK_comp12988_c0_seq2
105bp
 Single-strand_selective_monofunctional_uracil_DNA_glycosylase_[Operophtera_brumata]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
2823 O_BomoSK12541_complete:A_BomoSK_comp12988_c0_seq3
164bp
 Single-strand_selective_monofunctional_uracil_DNA_glycosylase_[Operophtera_brumata]
GO:0002100 P tRNA wobble adenosine to inosine editing
GO:0003824 F catalytic activity
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008251 F tRNA-specific adenosine deaminase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0052717 F tRNA-specific adenosine-34 deaminase activity
GO:0052718 C tRNA-specific adenosine-34 deaminase complex
2824 O_BomoSK12542_complete:A_BomoSK_comp12988_c0_seq3
105bp
 Single-strand_selective_monofunctional_uracil_DNA_glycosylase_[Operophtera_brumata]
GO:0000702 F oxidized base lesion DNA N-glycosylase activity
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
2825 O_BomoSK12543_complete:A_BomoSK_comp12989_c0_seq1
165bp
 PREDICTED:_transmembrane_protein_134_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2826 O_BomoSK12544_5prime_partial:A_BomoSK_comp12991_c0_seq1
228bp
 PREDICTED:_uncharacterized_protein_LOC101738673_[Bombyx_mori]
2827 O_BomoSK12545_5prime_partial:A_BomoSK_comp12992_c0_seq1
1721bp
 PREDICTED:_zinc_finger_protein_Xfin-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070895 P negative regulation of transposon integration
2828 O_BomoSK12546_5prime_partial:A_BomoSK_comp12992_c0_seq1
103bp
 PREDICTED:_serine/threonine-protein_kinase_MRCK_alpha_isoform_X5_[Anser_cygnoides_domesticus]
2829 O_BomoSK12547_complete:A_BomoSK_comp12993_c1_seq1
131bp
 hypothetical_protein_OBRU01_20383_[Operophtera_brumata]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
2830 O_BomoSK12548_complete:A_BomoSK_comp12993_c1_seq2
208bp
 hypothetical_protein_OBRU01_20383_[Operophtera_brumata]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
2831 O_BomoSK12549_complete:A_BomoSK_comp12993_c1_seq3
139bp
 hypothetical_protein_OBRU01_20383_[Operophtera_brumata]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
2832 O_BomoSK1254_complete:A_BomoSK_comp4043_c0_seq1
415bp
 PREDICTED:_flocculation_protein_FLO11_[Bombyx_mori]
2833 O_BomoSK12550_complete:A_BomoSK_comp12993_c1_seq4
131bp
 hypothetical_protein_OBRU01_20383_[Operophtera_brumata]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
2834 O_BomoSK12551_complete:A_BomoSK_comp12993_c1_seq4
101bp
 Vesicular_glutamate_transporter_2_[Trachymyrmex_cornetzi]
2835 O_BomoSK12552_complete:A_BomoSK_comp12993_c1_seq5
183bp
 hypothetical_protein_OBRU01_20383_[Operophtera_brumata]
GO:0001817 P regulation of cytokine production
GO:0004871 F obsolete signal transducer activity
GO:0005576 C extracellular region
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0007568 P aging
GO:0016020 C membrane
GO:0032496 P response to lipopolysaccharide
GO:0042347 P negative regulation of NIK/NF-kappaB signaling
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0050699 F WW domain binding
GO:0071222 P cellular response to lipopolysaccharide
2836 O_BomoSK12553_complete:A_BomoSK_comp12994_c0_seq1
776bp
 PREDICTED:_uncharacterized_protein_LOC106130280_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0002044 P blood vessel endothelial cell migration involved in intussusceptive angiogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0005639 C integral component of nuclear inner membrane
GO:0006997 P nucleus organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0032926 P negative regulation of activin receptor signaling pathway
GO:0035914 P skeletal muscle cell differentiation
GO:0051726 P regulation of cell cycle
GO:1903053 P regulation of extracellular matrix organization
2837 O_BomoSK12554_complete:A_BomoSK_comp12995_c0_seq2
156bp
 PREDICTED:_trafficking_protein_particle_complex_subunit_2-like_protein_[Papilio_polytes]
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0048471 C perinuclear region of cytoplasm
2838 O_BomoSK12555_complete:A_BomoSK_comp12995_c0_seq3
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
2839 O_BomoSK12556_complete:A_BomoSK_comp12995_c0_seq4
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
2840 O_BomoSK12557_complete:A_BomoSK_comp12995_c0_seq4
156bp
 PREDICTED:_trafficking_protein_particle_complex_subunit_2-like_protein_[Papilio_polytes]
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0048471 C perinuclear region of cytoplasm
2841 O_BomoSK12558_complete:A_BomoSK_comp12995_c0_seq5
170bp
 Von_Hippel-Lindau_disease_tumor_suppressor_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000902 P cell morphogenesis
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0019899 F enzyme binding
GO:0030891 C VCB complex
GO:0043066 P negative regulation of apoptotic process
GO:0045597 P positive regulation of cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050821 P protein stabilization
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061428 P negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0061630 F ubiquitin protein ligase activity
2842 O_BomoSK12559_complete:A_BomoSK_comp12996_c0_seq1
319bp
 elongation_factor_Ts_[Bombyx_mori]
GO:0003746 F translation elongation factor activity
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
2843 O_BomoSK1255_5prime_partial:A_BomoSK_comp4043_c0_seq1
345bp
 PREDICTED:_flocculation_protein_FLO11_[Bombyx_mori]
2844 O_BomoSK12560_complete:A_BomoSK_comp12996_c0_seq3
309bp
 elongation_factor_Ts_[Bombyx_mori]
GO:0003746 F translation elongation factor activity
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
2845 O_BomoSK12561_complete:A_BomoSK_comp12998_c0_seq1
251bp
 possible_antimicrobial_peptide_[Bombyx_mori]
GO:0005178 F integrin binding
GO:0005515 F protein binding
GO:0005518 F collagen binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005583 C fibrillar collagen trimer
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006641 P triglyceride metabolic process
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008201 F heparin binding
GO:0016337 P cell-cell adhesion
GO:0030036 P actin cytoskeleton organization
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031012 C extracellular matrix
GO:0032963 P collagen metabolic process
GO:0043206 P supramolecular fiber organization
GO:0043506 P regulation of JUN kinase activity
GO:0048251 P elastic fiber assembly
GO:0070062 C extracellular exosome
2846 O_BomoSK12562_complete:A_BomoSK_comp12999_c0_seq1
397bp
 PREDICTED:_inositol-trisphosphate_3-kinase_A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
2847 O_BomoSK12563_complete:A_BomoSK_comp12999_c0_seq2
245bp
 PREDICTED:_inositol-trisphosphate_3-kinase_A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
2848 O_BomoSK12564_complete:A_BomoSK_comp12999_c0_seq3
410bp
 PREDICTED:_inositol-trisphosphate_3-kinase_A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0006020 P inositol metabolic process
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0008440 F inositol-1,4,5-trisphosphate 3-kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030036 P actin cytoskeleton organization
GO:0043197 C dendritic spine
GO:0043647 P inositol phosphate metabolic process
GO:0048167 P regulation of synaptic plasticity
GO:0048365 F small GTPase binding
GO:0061003 P positive regulation of dendritic spine morphogenesis
GO:0097062 P dendritic spine maintenance
2849 O_BomoSK12565_complete:A_BomoSK_comp13000_c0_seq1
153bp
 PREDICTED:_putative_methyltransferase_WBSCR22-like_protein_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
2850 O_BomoSK12566_complete:A_BomoSK_comp13000_c0_seq1
101bp
 PREDICTED:_putative_methyltransferase_WBSCR22-like_protein_isoform_X2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006364 P rRNA processing
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
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