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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2611 O_BomoSK12350_3prime_partial:A_BomoSK_comp12929_c0_seq4
315bp
 PREDICTED:_phosphatidate_phosphatase_LPIN3_isoform_X1_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008195 F phosphatidate phosphatase activity
GO:0009062 P fatty acid catabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019432 P triglyceride biosynthetic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
2612 O_BomoSK12351_5prime_partial:A_BomoSK_comp12929_c0_seq4
127bp
 elongation_factor_Tu_GTP_binding_domain-containing_protein_[Colletotrichum_higginsianum]
2613 O_BomoSK12352_3prime_partial:A_BomoSK_comp12929_c0_seq5
391bp
 PREDICTED:_phosphatidate_phosphatase_LPIN3_isoform_X1_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008195 F phosphatidate phosphatase activity
GO:0009062 P fatty acid catabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019432 P triglyceride biosynthetic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
2614 O_BomoSK12353_5prime_partial:A_BomoSK_comp12929_c0_seq5
127bp
 elongation_factor_Tu_GTP_binding_domain-containing_protein_[Colletotrichum_higginsianum]
2615 O_BomoSK12354_3prime_partial:A_BomoSK_comp12929_c0_seq5
101bp
 PREDICTED:_vomeronasal_type-2_receptor_26-like_[Xenopus_tropicalis]
2616 O_BomoSK12355_complete:A_BomoSK_comp12929_c0_seq6
326bp
 PREDICTED:_phosphatidate_phosphatase_LPIN2_isoform_X3_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008195 F phosphatidate phosphatase activity
GO:0009062 P fatty acid catabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0019432 P triglyceride biosynthetic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
2617 O_BomoSK12356_complete:A_BomoSK_comp12929_c0_seq6
145bp
 PREDICTED:_zinc_finger_protein_518A_isoform_X2_[Lepisosteus_oculatus]
2618 O_BomoSK12357_3prime_partial:A_BomoSK_comp12929_c0_seq6
114bp
 PREDICTED:_phosphatidate_phosphatase_LPIN3_isoform_X1_[Bombyx_mori]
2619 O_BomoSK12358_3prime_partial:A_BomoSK_comp12929_c0_seq6
101bp
 PREDICTED:_vomeronasal_type-2_receptor_26-like_[Xenopus_tropicalis]
2620 O_BomoSK12359_3prime_partial:A_BomoSK_comp12930_c0_seq2
180bp
 PREDICTED:_uncharacterized_protein_LOC101737183_[Bombyx_mori]
2621 O_BomoSK1235_3prime_partial:A_BomoSK_comp4020_c0_seq1
156bp
 PREDICTED:_nucleolar_MIF4G_domain-containing_protein_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0042274 P ribosomal small subunit biogenesis
2622 O_BomoSK12360_3prime_partial:A_BomoSK_comp12931_c0_seq1
506bp
 PREDICTED:_peptidylprolyl_isomerase_domain_and_WD_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
2623 O_BomoSK12361_5prime_partial:A_BomoSK_comp12931_c0_seq1
451bp
 unknown_[Zea_mays]
2624 O_BomoSK12362_complete:A_BomoSK_comp12931_c0_seq1
137bp
 PREDICTED:_peptidylprolyl_isomerase_domain_and_WD_repeat-containing_protein_1-like,_partial_[Amyelois_transitella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
2625 O_BomoSK12363_3prime_partial:A_BomoSK_comp12931_c0_seq2
620bp
 PREDICTED:_peptidylprolyl_isomerase_domain_and_WD_repeat-containing_protein_1-like_[Amyelois_transitella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
2626 O_BomoSK12364_5prime_partial:A_BomoSK_comp12931_c0_seq2
451bp
 unknown_[Zea_mays]
2627 O_BomoSK12365_complete:A_BomoSK_comp12932_c0_seq1
476bp
 PREDICTED:_serine/threonine-protein_phosphatase_4_regulatory_subunit_2_[Amyelois_transitella]
GO:0000278 P mitotic cell cycle
GO:0000775 C chromosome, centromeric region
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0019888 F protein phosphatase regulator activity
GO:0022008 P neurogenesis
GO:0030289 C protein phosphatase 4 complex
GO:0035304 P regulation of protein dephosphorylation
GO:0050790 P regulation of catalytic activity
2628 O_BomoSK12366_complete:A_BomoSK_comp12932_c0_seq1
116bp
 PREDICTED:_2-aminoethanethiol_dioxygenase-like_isoform_X1_[Phoenix_dactylifera]
2629 O_BomoSK12367_complete:A_BomoSK_comp12933_c0_seq1
215bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2630 O_BomoSK12368_complete:A_BomoSK_comp12933_c0_seq2
191bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005759 C mitochondrial matrix
GO:0005925 C focal adhesion
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2631 O_BomoSK12369_complete:A_BomoSK_comp12933_c0_seq3
136bp
 oligoribonuclease,_mitochondrial_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0008946 F oligonucleotidase activity
GO:0009267 P cellular response to starvation
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
2632 O_BomoSK1236_5prime_partial:A_BomoSK_comp4020_c0_seq1
121bp
 hypothetical_protein_[Curtobacterium_sp._Leaf261]
2633 O_BomoSK12370_5prime_partial:A_BomoSK_comp12935_c0_seq1
120bp
2634 O_BomoSK12371_internal:A_BomoSK_comp12936_c0_seq2
160bp
 PREDICTED:_zinc_finger_CCCH_domain-containing_protein_18-like,_partial_[Papilio_polytes]
2635 O_BomoSK12372_internal:A_BomoSK_comp12936_c0_seq2
159bp
 PREDICTED:_zinc_finger_CCCH_domain-containing_protein_18_isoform_X2_[Bombyx_mori]
2636 O_BomoSK12373_3prime_partial:A_BomoSK_comp12936_c0_seq3
498bp
 PREDICTED:_zinc_finger_CCCH_domain-containing_protein_18_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
2637 O_BomoSK12374_complete:A_BomoSK_comp12936_c0_seq3
201bp
 hypothetical_protein_[Anabaena_sp._90]
2638 O_BomoSK12375_complete:A_BomoSK_comp12936_c0_seq3
118bp
 PREDICTED:_voltage-dependent_P/Q-type_calcium_channel_subunit_alpha-1A_isoform_X12_[Danio_rerio]
2639 O_BomoSK12376_5prime_partial:A_BomoSK_comp12937_c0_seq1
141bp
 ligand-binding_protein_SH3_[Pseudomonas_lutea]
2640 O_BomoSK12377_complete:A_BomoSK_comp12938_c0_seq1
1255bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_cytokine_receptor_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0002009 P morphogenesis of an epithelium
GO:0004888 F transmembrane signaling receptor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006955 P immune response
GO:0007259 P receptor signaling pathway via JAK-STAT
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007298 P border follicle cell migration
GO:0007350 P blastoderm segmentation
GO:0007424 P open tracheal system development
GO:0007425 P epithelial cell fate determination, open tracheal system
GO:0007442 P hindgut morphogenesis
GO:0007616 P long-term memory
GO:0008284 P positive regulation of cell population proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0016327 C apicolateral plasma membrane
GO:0019955 F cytokine binding
GO:0042981 P regulation of apoptotic process
GO:0045475 P locomotor rhythm
GO:0045824 P negative regulation of innate immune response
GO:0046982 F protein heterodimerization activity
GO:0050829 P defense response to Gram-negative bacterium
GO:0060429 P epithelium development
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