Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2551	O_BomoSK12297_3prime_partial:A_BomoSK_comp12910_c0_seq6 727bp	Bomo_Chr3	Protein_smoothened_[Papilio_machaon]	GO:0005581 C collagen trimer GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex GO:0006378 P mRNA polyadenylation GO:0006379 P mRNA cleavage GO:0006397 P mRNA processing GO:0044822 F RNA binding
2552	O_BomoSK12298_5prime_partial:A_BomoSK_comp12912_c0_seq1 356bp	Bomo_Chr10	PREDICTED:_RNA-binding_protein_Musashi_homolog_Rbp6_isoform_X3_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0003727 F single-stranded RNA binding GO:0003729 F mRNA binding GO:0005737 C cytoplasm GO:0005844 C polysome GO:0008266 F poly(U) RNA binding GO:0048864 P stem cell development
2553	O_BomoSK12299_complete:A_BomoSK_comp12912_c0_seq1 121bp	Bomo_Chr10	hypothetical_protein_HMPREF9017_01604_[Parascardovia_denticolens_F0305]
2554	O_BomoSK1229_3prime_partial:A_BomoSK_comp4012_c0_seq1 281bp	Bomo_Chr19	PREDICTED:_enhancer_of_mRNA-decapping_protein_3,_partial_[Bombyx_mori]	GO:0000932 C P-body GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005737 C cytoplasm GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA GO:0033962 P P-body assembly GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic GO:1990174 F phosphodiesterase decapping endonuclease activity
2555	O_BomoSK122_internal:A_BomoSK_comp409_c0_seq1 150bp	Bomo_Chr12	helicase/secretion_neighborhood_CpaE-like_protein_[Chlamydia_trachomatis]
2556	O_BomoSK12300_complete:A_BomoSK_comp12914_c1_seq1 113bp	Bomo_Chr24	MULTISPECIES:_hypothetical_protein_[Roseomonas]
2557	O_BomoSK12301_complete:A_BomoSK_comp12914_c1_seq1 106bp	Bomo_Chr24	mRNA_cleavage_stimulating_factor,_50kD-subunit,_putative,_partial_[Papilio_xuthus]	GO:0000398 P mRNA splicing, via spliceosome GO:0003723 F RNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0006369 P termination of RNA polymerase II transcription GO:0006378 P mRNA polyadenylation GO:0006379 P mRNA cleavage GO:0006396 P RNA processing GO:0006397 P mRNA processing GO:0031124 P mRNA 3'-end processing GO:0044822 F RNA binding
2558	O_BomoSK12302_complete:A_BomoSK_comp12914_c1_seq2 434bp	Bomo_Chr24	PREDICTED:_cleavage_stimulation_factor_subunit_1_[Papilio_machaon]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0008150 P biological_process GO:0044822 F RNA binding
2559	O_BomoSK12303_complete:A_BomoSK_comp12914_c1_seq2 188bp	Bomo_Chr24	nitrilase_[Geoglobus_acetivorans]
2560	O_BomoSK12304_complete:A_BomoSK_comp12914_c1_seq2 137bp	Bomo_Chr24
2561	O_BomoSK12305_complete:A_BomoSK_comp12914_c1_seq3 335bp	Bomo_Chr24	PREDICTED:_cleavage_stimulation_factor_subunit_1_[Papilio_machaon]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0008150 P biological_process GO:0044822 F RNA binding
2562	O_BomoSK12306_complete:A_BomoSK_comp12914_c1_seq3 137bp	Bomo_Chr24
2563	O_BomoSK12307_complete:A_BomoSK_comp12915_c0_seq1 886bp	Bomo_Chr4	PREDICTED:_LOW_QUALITY_PROTEIN:_importin_subunit_beta-1_[Bombyx_mori]	GO:0000059 P obsolete protein import into nucleus, docking GO:0000060 P obsolete protein import into nucleus, translocation GO:0005515 F protein binding GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006606 P protein import into nucleus GO:0006607 P NLS-bearing protein import into nucleus GO:0006610 P ribosomal protein import into nucleus GO:0006810 P transport GO:0006886 P intracellular protein transport GO:0007079 P mitotic chromosome movement towards spindle pole GO:0007080 P mitotic metaphase plate congression GO:0008139 F nuclear localization sequence binding GO:0008536 F small GTPase binding GO:0008565 F obsolete protein transporter activity GO:0015031 P protein transport GO:0016020 C membrane GO:0019899 F enzyme binding GO:0019904 F protein domain specific binding GO:0030953 P astral microtubule organization GO:0031291 P Ran protein signal transduction GO:0031965 C nuclear membrane GO:0034399 C nuclear periphery GO:0040001 P establishment of mitotic spindle localization GO:0043234 C protein-containing complex GO:0044822 F RNA binding GO:0045184 P establishment of protein localization GO:0051879 F Hsp90 protein binding GO:0070062 C extracellular exosome GO:0071782 C endoplasmic reticulum tubular network GO:0090307 P mitotic spindle assembly
2564	O_BomoSK12308_3prime_partial:A_BomoSK_comp12916_c0_seq1 226bp	Bomo_Chr10
2565	O_BomoSK12309_complete:A_BomoSK_comp12916_c0_seq1 124bp	Bomo_Chr10	PREDICTED:_E3_ubiquitin-protein_ligase_MGRN1_[Bombyx_mori]
2566	O_BomoSK1230_3prime_partial:A_BomoSK_comp4015_c0_seq1 205bp	Bomo_Chr6	eukaryotic_initiation_factor_4E-2_[Bombyx_mori]	GO:0001701 P in utero embryonic development GO:0003723 F RNA binding GO:0003743 F translation initiation factor activity GO:0005737 C cytoplasm GO:0005845 C mRNA cap binding complex GO:0006412 P translation GO:0006413 P translational initiation GO:0006417 P regulation of translation GO:0017148 P negative regulation of translation GO:0031625 F ubiquitin protein ligase binding GO:0044822 F RNA binding
2567	O_BomoSK12310_complete:A_BomoSK_comp12916_c0_seq2 572bp	Bomo_Chr10	PREDICTED:_E3_ubiquitin-protein_ligase_MGRN1_[Bombyx_mori]	GO:0008270 F zinc ion binding GO:0046872 F metal ion binding
2568	O_BomoSK12311_complete:A_BomoSK_comp12916_c0_seq2 256bp	Bomo_Chr10
2569	O_BomoSK12312_complete:A_BomoSK_comp12917_c0_seq1 105bp	Bomo_Chr22	PREDICTED:_D-2-hydroxyglutarate_dehydrogenase,_mitochondrial-like_[Amyelois_transitella]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0050660 F flavin adenine dinucleotide binding GO:0055114 P obsolete oxidation-reduction process
2570	O_BomoSK12313_complete:A_BomoSK_comp12917_c0_seq2 314bp	Bomo_Chr22	PREDICTED:_D-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_polytes]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0010042 P response to manganese ion GO:0010043 P response to zinc ion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0032025 P response to cobalt ion GO:0032026 P response to magnesium ion GO:0044267 P cellular protein metabolic process GO:0050660 F flavin adenine dinucleotide binding GO:0051592 P response to calcium ion GO:0051990 F (R)-2-hydroxyglutarate dehydrogenase activity GO:0055114 P obsolete oxidation-reduction process
2571	O_BomoSK12314_complete:A_BomoSK_comp12917_c0_seq2 106bp	Bomo_Chr22	hypothetical_protein_[Sinorhizobium_fredii]
2572	O_BomoSK12315_complete:A_BomoSK_comp12917_c0_seq3 314bp	Bomo_Chr22	PREDICTED:_D-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_polytes]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0010042 P response to manganese ion GO:0010043 P response to zinc ion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0032025 P response to cobalt ion GO:0032026 P response to magnesium ion GO:0044267 P cellular protein metabolic process GO:0050660 F flavin adenine dinucleotide binding GO:0051592 P response to calcium ion GO:0051990 F (R)-2-hydroxyglutarate dehydrogenase activity GO:0055114 P obsolete oxidation-reduction process
2573	O_BomoSK12316_complete:A_BomoSK_comp12917_c0_seq3 160bp	Bomo_Chr22	D-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_xuthus]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0050660 F flavin adenine dinucleotide binding GO:0055114 P obsolete oxidation-reduction process
2574	O_BomoSK12317_complete:A_BomoSK_comp12917_c0_seq3 106bp	Bomo_Chr22	hypothetical_protein_[Sinorhizobium_fredii]
2575	O_BomoSK12318_complete:A_BomoSK_comp12917_c0_seq4 372bp	Bomo_Chr22	PREDICTED:_D-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_polytes]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0010042 P response to manganese ion GO:0010043 P response to zinc ion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0032025 P response to cobalt ion GO:0032026 P response to magnesium ion GO:0044267 P cellular protein metabolic process GO:0050660 F flavin adenine dinucleotide binding GO:0051592 P response to calcium ion GO:0051990 F (R)-2-hydroxyglutarate dehydrogenase activity GO:0055114 P obsolete oxidation-reduction process
2576	O_BomoSK12319_complete:A_BomoSK_comp12917_c0_seq4 106bp	Bomo_Chr22	hypothetical_protein_[Sinorhizobium_fredii]
2577	O_BomoSK1231_3prime_partial:A_BomoSK_comp4015_c0_seq1 172bp	Bomo_Chr6	hypothetical_protein_[Asaia_astilbis]
2578	O_BomoSK12320_complete:A_BomoSK_comp12917_c0_seq5 506bp	Bomo_Chr22	PREDICTED:_D-2-hydroxyglutarate_dehydrogenase,_mitochondrial_[Papilio_machaon]	GO:0003824 F catalytic activity GO:0005739 C mitochondrion GO:0010042 P response to manganese ion GO:0010043 P response to zinc ion GO:0016491 F oxidoreductase activity GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors GO:0032025 P response to cobalt ion GO:0032026 P response to magnesium ion GO:0044267 P cellular protein metabolic process GO:0050660 F flavin adenine dinucleotide binding GO:0051592 P response to calcium ion GO:0051990 F (R)-2-hydroxyglutarate dehydrogenase activity GO:0055114 P obsolete oxidation-reduction process
2579	O_BomoSK12321_complete:A_BomoSK_comp12917_c0_seq5 106bp	Bomo_Chr22	hypothetical_protein_[Sinorhizobium_fredii]
2580	O_BomoSK12322_3prime_partial:A_BomoSK_comp12918_c0_seq1 734bp	Bomo_Chr11	PREDICTED:_LOW_QUALITY_PROTEIN:_DNA_excision_repair_protein_haywire_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000990 F obsolete transcription factor activity, core RNA polymerase binding GO:0001111 P promoter clearance from RNA polymerase II promoter GO:0001113 P transcription open complex formation at RNA polymerase II promoter GO:0003677 F DNA binding GO:0004003 F DNA helicase activity GO:0004386 F helicase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005675 C transcription factor TFIIH holo complex GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006366 P transcription by RNA polymerase II GO:0006367 P transcription initiation from RNA polymerase II promoter GO:0006974 P cellular response to DNA damage stimulus GO:0009411 P response to UV GO:0016787 F hydrolase activity GO:0032508 P DNA duplex unwinding GO:0043140 F 3'-5' DNA helicase activity GO:1903506 P regulation of nucleic acid-templated transcription