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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1561 O_BomoSK11405_5prime_partial:A_BomoSK_comp12598_c0_seq1
120bp
 MULTISPECIES:_AI-2E_family_transporter_[Methylotenera]
1562 O_BomoSK11406_complete:A_BomoSK_comp12598_c0_seq2
720bp
 PREDICTED:_NAD(P)_transhydrogenase,_mitochondrial-like_[Amyelois_transitella]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006740 P NADPH regeneration
GO:0008746 F NAD(P)+ transhydrogenase activity
GO:0008750 F NAD(P)+ transhydrogenase (AB-specific) activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0045454 P cell redox homeostasis
GO:0050661 F NADP binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0072593 P reactive oxygen species metabolic process
1563 O_BomoSK11407_complete:A_BomoSK_comp12598_c0_seq2
215bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_nucleoside_diphosphate-linked_moiety_X_motif_8,_mitochondrial-like_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
1564 O_BomoSK11408_complete:A_BomoSK_comp12598_c0_seq2
145bp
 hypothetical_protein_Y695_04745_[Hydrogenophaga_sp._T4]
1565 O_BomoSK11409_complete:A_BomoSK_comp12598_c0_seq2
114bp
1566 O_BomoSK1140_5prime_partial:A_BomoSK_comp3918_c0_seq1
155bp
 Hypothetical_protein_GL50803_20134_[Giardia_lamblia_ATCC_50803]
1567 O_BomoSK11410_5prime_partial:A_BomoSK_comp12600_c0_seq1
103bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
1568 O_BomoSK11411_complete:A_BomoSK_comp12600_c0_seq1
103bp
1569 O_BomoSK11412_complete:A_BomoSK_comp12601_c0_seq1
646bp
 PREDICTED:_translation_initiation_factor_eIF-2B_subunit_epsilon_isoform_X2_[Bombyx_mori]
GO:0001541 P ovarian follicle development
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007568 P aging
GO:0009408 P response to heat
GO:0009749 P response to glucose
GO:0010226 P response to lithium ion
GO:0014002 P astrocyte development
GO:0014003 P oligodendrocyte development
GO:0021766 P hippocampus development
GO:0031369 F translation initiation factor binding
GO:0034976 P response to endoplasmic reticulum stress
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042552 P myelination
GO:0043065 P positive regulation of apoptotic process
GO:0043434 P response to peptide hormone
GO:0043547 P positive regulation of GTPase activity
GO:0045727 P positive regulation of translation
GO:0045948 P positive regulation of translational initiation
GO:0048708 P astrocyte differentiation
1570 O_BomoSK11413_3prime_partial:A_BomoSK_comp12604_c0_seq1
304bp
 PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006771 P riboflavin metabolic process
GO:0006810 P transport
GO:0007605 P sensory perception of sound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032217 F riboflavin transmembrane transporter activity
GO:0032218 P riboflavin transport
GO:0034605 P cellular response to heat
1571 O_BomoSK11414_5prime_partial:A_BomoSK_comp12604_c0_seq1
159bp
1572 O_BomoSK11415_3prime_partial:A_BomoSK_comp12604_c0_seq4
304bp
 PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006771 P riboflavin metabolic process
GO:0006810 P transport
GO:0007605 P sensory perception of sound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032217 F riboflavin transmembrane transporter activity
GO:0032218 P riboflavin transport
GO:0034605 P cellular response to heat
1573 O_BomoSK11416_5prime_partial:A_BomoSK_comp12604_c0_seq4
159bp
1574 O_BomoSK11417_3prime_partial:A_BomoSK_comp12604_c0_seq5
330bp
 PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006771 P riboflavin metabolic process
GO:0006810 P transport
GO:0007605 P sensory perception of sound
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032217 F riboflavin transmembrane transporter activity
GO:0032218 P riboflavin transport
GO:0034605 P cellular response to heat
1575 O_BomoSK11418_5prime_partial:A_BomoSK_comp12604_c0_seq5
159bp
1576 O_BomoSK11419_3prime_partial:A_BomoSK_comp12604_c0_seq6
325bp
 PREDICTED:_solute_carrier_family_52,_riboflavin_transporter,_member_3_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1577 O_BomoSK1141_complete:A_BomoSK_comp3924_c0_seq1
375bp
 Cysteine-rich_with_EGF-like_domain_protein_2_[Operophtera_brumata]
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
1578 O_BomoSK11420_5prime_partial:A_BomoSK_comp12604_c0_seq6
159bp
1579 O_BomoSK11421_5prime_partial:A_BomoSK_comp12605_c0_seq2
118bp
 Fizzy-related_protein-like_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0010997 F anaphase-promoting complex binding
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031965 C nuclear membrane
GO:0040020 P regulation of meiotic nuclear division
GO:0045732 P positive regulation of protein catabolic process
GO:0051301 P cell division
GO:0051488 P positive regulation of ubiquitin protein ligase activity
GO:0070306 P lens fiber cell differentiation
GO:0090344 P negative regulation of cell aging
GO:0097027 F ubiquitin-protein transferase activator activity
1580 O_BomoSK11422_complete:A_BomoSK_comp12606_c0_seq2
422bp
 PREDICTED:_uncharacterized_protein_LOC101746296_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1581 O_BomoSK11423_5prime_partial:A_BomoSK_comp12606_c0_seq3
346bp
 PREDICTED:_uncharacterized_protein_LOC101746296_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1582 O_BomoSK11424_complete:A_BomoSK_comp12606_c0_seq3
113bp
 hypothetical_protein_[Trypanosoma_cruzi_strain_CL_Brener]
1583 O_BomoSK11425_complete:A_BomoSK_comp12607_c0_seq1
102bp
 PREDICTED:_ARL14_effector_protein_[Amyelois_transitella]
GO:0005737 C cytoplasm
1584 O_BomoSK11426_complete:A_BomoSK_comp12607_c0_seq2
102bp
 PREDICTED:_ARL14_effector_protein_[Amyelois_transitella]
GO:0005737 C cytoplasm
1585 O_BomoSK11427_complete:A_BomoSK_comp12610_c0_seq1
1042bp
 PREDICTED:_rab_GTPase-activating_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006886 P intracellular protein transport
GO:0007049 P cell cycle
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043547 P positive regulation of GTPase activity
GO:0090630 P activation of GTPase activity
1586 O_BomoSK11428_complete:A_BomoSK_comp12610_c0_seq1
112bp
 SKI2-family_helicase_[Sulfobacillus_acidophilus_TPY]
1587 O_BomoSK11429_complete:A_BomoSK_comp12610_c0_seq1
111bp
 patatin-like_phospholipase_domain-containing_protein_[Cryptococcus_gattii_IND107]
1588 O_BomoSK1142_complete:A_BomoSK_comp3926_c0_seq1
229bp
 PREDICTED:_uncharacterized_protein_LOC106134655_isoform_X2_[Amyelois_transitella]
1589 O_BomoSK11430_complete:A_BomoSK_comp12610_c0_seq2
1140bp
 PREDICTED:_rab_GTPase-activating_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006886 P intracellular protein transport
GO:0007049 P cell cycle
GO:0012505 C endomembrane system
GO:0017137 F small GTPase binding
GO:0031338 P regulation of vesicle fusion
GO:0043547 P positive regulation of GTPase activity
GO:0090630 P activation of GTPase activity
1590 O_BomoSK11431_complete:A_BomoSK_comp12610_c0_seq2
112bp
 SKI2-family_helicase_[Sulfobacillus_acidophilus_TPY]
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