SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1351 O_BomoSK11216_complete:A_BomoSK_comp12545_c0_seq1
100bp
1352 O_BomoSK11217_3prime_partial:A_BomoSK_comp12546_c0_seq1
596bp
 PREDICTED:_histone_acetyltransferase_p300-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0001666 P response to hypoxia
GO:0002039 F p53 binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006473 P protein acetylation
GO:0007165 P signal transduction
GO:0007219 P Notch signaling pathway
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016604 C nuclear body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0032481 P positive regulation of type I interferon production
GO:0033613 F DNA-binding transcription factor binding
GO:0034212 F peptide N-acetyltransferase activity
GO:0034644 P cellular response to UV
GO:0042592 P homeostatic process
GO:0042733 P embryonic digit morphogenesis
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0042981 P regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043426 F MRF binding
GO:0044255 P cellular lipid metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0060355 P positive regulation of cell adhesion molecule production
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070555 P response to interleukin-1
GO:0098609 P cell-cell adhesion
GO:1900034 P regulation of cellular response to heat
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1901224 P positive regulation of NIK/NF-kappaB signaling
GO:1904837 P beta-catenin-TCF complex assembly
1353 O_BomoSK11218_5prime_partial:A_BomoSK_comp12546_c0_seq1
197bp
1354 O_BomoSK11219_5prime_partial:A_BomoSK_comp12546_c0_seq1
196bp
1355 O_BomoSK1121_complete:A_BomoSK_comp3896_c0_seq1
346bp
 PREDICTED:_protein_FAN-like_isoform_X2_[Bombyx_mori]
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006672 P ceramide metabolic process
GO:0007165 P signal transduction
GO:0012505 C endomembrane system
GO:0016230 F sphingomyelin phosphodiesterase activator activity
GO:0019898 C extrinsic component of membrane
GO:0043065 P positive regulation of apoptotic process
GO:0043085 P positive regulation of catalytic activity
GO:2000304 P positive regulation of ceramide biosynthetic process
1356 O_BomoSK11220_3prime_partial:A_BomoSK_comp12546_c0_seq2
600bp
 PREDICTED:_histone_acetyltransferase_p300-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0001666 P response to hypoxia
GO:0002039 F p53 binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006473 P protein acetylation
GO:0007165 P signal transduction
GO:0007219 P Notch signaling pathway
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016604 C nuclear body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0032481 P positive regulation of type I interferon production
GO:0033613 F DNA-binding transcription factor binding
GO:0034212 F peptide N-acetyltransferase activity
GO:0034644 P cellular response to UV
GO:0042592 P homeostatic process
GO:0042733 P embryonic digit morphogenesis
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0042981 P regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043426 F MRF binding
GO:0044255 P cellular lipid metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0060355 P positive regulation of cell adhesion molecule production
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070555 P response to interleukin-1
GO:0098609 P cell-cell adhesion
GO:1900034 P regulation of cellular response to heat
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1901224 P positive regulation of NIK/NF-kappaB signaling
GO:1904837 P beta-catenin-TCF complex assembly
1357 O_BomoSK11221_5prime_partial:A_BomoSK_comp12546_c0_seq2
197bp
1358 O_BomoSK11222_5prime_partial:A_BomoSK_comp12546_c0_seq2
196bp
1359 O_BomoSK11223_3prime_partial:A_BomoSK_comp12546_c0_seq3
595bp
 PREDICTED:_histone_acetyltransferase_p300-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0001666 P response to hypoxia
GO:0002039 F p53 binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006473 P protein acetylation
GO:0007165 P signal transduction
GO:0007219 P Notch signaling pathway
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016604 C nuclear body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0032481 P positive regulation of type I interferon production
GO:0033613 F DNA-binding transcription factor binding
GO:0034212 F peptide N-acetyltransferase activity
GO:0034644 P cellular response to UV
GO:0042592 P homeostatic process
GO:0042733 P embryonic digit morphogenesis
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0042981 P regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043426 F MRF binding
GO:0044255 P cellular lipid metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0060355 P positive regulation of cell adhesion molecule production
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070555 P response to interleukin-1
GO:0098609 P cell-cell adhesion
GO:1900034 P regulation of cellular response to heat
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1901224 P positive regulation of NIK/NF-kappaB signaling
GO:1904837 P beta-catenin-TCF complex assembly
1360 O_BomoSK11224_5prime_partial:A_BomoSK_comp12546_c0_seq3
197bp
1361 O_BomoSK11225_5prime_partial:A_BomoSK_comp12546_c0_seq3
196bp
1362 O_BomoSK11226_3prime_partial:A_BomoSK_comp12546_c0_seq4
591bp
 PREDICTED:_histone_acetyltransferase_p300-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001085 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001191 F obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0001666 P response to hypoxia
GO:0002039 F p53 binding
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0003682 F chromatin binding
GO:0003684 F damaged DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003712 F transcription coregulator activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0004871 F obsolete signal transducer activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006473 P protein acetylation
GO:0007165 P signal transduction
GO:0007219 P Notch signaling pathway
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0008589 P regulation of smoothened signaling pathway
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016604 C nuclear body
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018076 P N-terminal peptidyl-lysine acetylation
GO:0032481 P positive regulation of type I interferon production
GO:0033613 F DNA-binding transcription factor binding
GO:0034212 F peptide N-acetyltransferase activity
GO:0034644 P cellular response to UV
GO:0042592 P homeostatic process
GO:0042733 P embryonic digit morphogenesis
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0042981 P regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043426 F MRF binding
GO:0044255 P cellular lipid metabolic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0060355 P positive regulation of cell adhesion molecule production
GO:0061418 P regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0070555 P response to interleukin-1
GO:0098609 P cell-cell adhesion
GO:1900034 P regulation of cellular response to heat
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:1901224 P positive regulation of NIK/NF-kappaB signaling
GO:1904837 P beta-catenin-TCF complex assembly
1363 O_BomoSK11227_5prime_partial:A_BomoSK_comp12546_c0_seq4
197bp
1364 O_BomoSK11228_5prime_partial:A_BomoSK_comp12546_c0_seq4
196bp
1365 O_BomoSK11229_complete:A_BomoSK_comp12547_c0_seq1
246bp
 DID_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
1366 O_BomoSK1122_complete:A_BomoSK_comp3896_c0_seq1
123bp
 PREDICTED:_uncharacterized_protein_LOC100891250_[Strongylocentrotus_purpuratus]
1367 O_BomoSK11230_5prime_partial:A_BomoSK_comp12547_c0_seq2
268bp
 DID_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
1368 O_BomoSK11231_5prime_partial:A_BomoSK_comp12547_c0_seq3
254bp
 DID_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
1369 O_BomoSK11232_complete:A_BomoSK_comp12548_c0_seq3
195bp
 hypothetical_protein_KGM_14799_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0004792 F thiosulfate sulfurtransferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
1370 O_BomoSK11233_complete:A_BomoSK_comp12548_c0_seq4
179bp
 hypothetical_protein_KGM_14799_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0004792 F thiosulfate sulfurtransferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
1371 O_BomoSK11234_complete:A_BomoSK_comp12549_c0_seq1
658bp
 Glucose_dehydrogenase_[acceptor]_[Papilio_machaon]
GO:0004344 F glucose dehydrogenase activity
GO:0005576 C extracellular region
GO:0006006 P glucose metabolic process
GO:0008364 P pupal chitin-based cuticle development
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019233 P sensory perception of pain
GO:0042335 P cuticle development
GO:0046693 P sperm storage
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
1372 O_BomoSK11235_complete:A_BomoSK_comp12552_c0_seq1
357bp
 PREDICTED:_protein_lunapark-B_[Papilio_machaon]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
1373 O_BomoSK11236_complete:A_BomoSK_comp12552_c0_seq1
146bp
 unnamed_protein_product_[Kuraishia_capsulata_CBS_1993]
1374 O_BomoSK11237_5prime_partial:A_BomoSK_comp12552_c0_seq1
115bp
 Peroxisomal_membrane_protein_PMP22_[Auxenochlorella_protothecoides]
1375 O_BomoSK11238_complete:A_BomoSK_comp12553_c0_seq1
302bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1376 O_BomoSK11239_complete:A_BomoSK_comp12553_c0_seq1
209bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1377 O_BomoSK1123_3prime_partial:A_BomoSK_comp3897_c0_seq1
423bp
 PREDICTED:_activating_signal_cointegrator_1_complex_subunit_2_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
1378 O_BomoSK11240_complete:A_BomoSK_comp12553_c0_seq2
510bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1379 O_BomoSK11241_complete:A_BomoSK_comp12553_c0_seq3
510bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1380 O_BomoSK11242_complete:A_BomoSK_comp12553_c0_seq4
302bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
previous next from show/33939

- SilkBase 1999-2023 -