SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/51699
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1321 O_BomoN4EE1118_internal:A_BomoN4EE_TR15603_c0_g1_i1
220bp
 C-Cbl-associated_protein_isoform_A_[Operophtera_brumata]
1322 O_BomoN4EE11190_5prime_partial:A_BomoN4EE_TR29285_c0_g1_i1
104bp
1323 O_BomoN4EE11191_complete:A_BomoN4EE_TR29285_c1_g1_i1
595bp
 PREDICTED:_transcription_factor_EB-like_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001892 P embryonic placenta development
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006914 P autophagy
GO:0006959 P humoral immune response
GO:0007040 P lysosome organization
GO:0010508 P positive regulation of autophagy
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
1324 O_BomoN4EE11192_complete:A_BomoN4EE_TR29285_c1_g1_i1
101bp
1325 O_BomoN4EE11193_complete:A_BomoN4EE_TR29285_c1_g1_i1
101bp
1326 O_BomoN4EE11194_complete:A_BomoN4EE_TR29285_c1_g1_i1
101bp
1327 O_BomoN4EE11195_complete:A_BomoN4EE_TR29289_c1_g2_i1
418bp
 PREDICTED:_phosphatidylserine_synthase_1_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006659 P phosphatidylserine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
1328 O_BomoN4EE11196_complete:A_BomoN4EE_TR29289_c1_g2_i1
122bp
 hypothetical_protein,_variant_1_[Aphanomyces_astaci]
1329 O_BomoN4EE11197_complete:A_BomoN4EE_TR29289_c1_g2_i2
410bp
 PREDICTED:_phosphatidylserine_synthase_1_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006659 P phosphatidylserine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
1330 O_BomoN4EE11198_complete:A_BomoN4EE_TR29289_c1_g2_i2
122bp
 hypothetical_protein,_variant_1_[Aphanomyces_astaci]
1331 O_BomoN4EE11199_complete:A_BomoN4EE_TR29289_c1_g2_i2
102bp
1332 O_BomoN4EE1119_complete:A_BomoN4EE_TR15613_c0_g1_i1
112bp
1333 O_BomoN4EE111_5prime_partial:A_BomoN4EE_TR1727_c0_g1_i1
122bp
1334 O_BomoN4EE11200_complete:A_BomoN4EE_TR29289_c1_g2_i3
102bp
1335 O_BomoN4EE11201_complete:A_BomoN4EE_TR29290_c0_g1_i1
120bp
 PREDICTED:_histone_H2A,_sperm-like_[Plutella_xylostella]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0046982 F protein heterodimerization activity
1336 O_BomoN4EE11202_complete:A_BomoN4EE_TR29290_c0_g1_i2
120bp
 PREDICTED:_histone_H2A,_sperm-like_[Plutella_xylostella]
GO:0000786 C nucleosome
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0046982 F protein heterodimerization activity
1337 O_BomoN4EE11203_complete:A_BomoN4EE_TR29291_c0_g2_i1
667bp
 PREDICTED:_zinc_finger_protein_502-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1338 O_BomoN4EE11204_complete:A_BomoN4EE_TR29291_c0_g2_i2
645bp
 PREDICTED:_zinc_finger_protein_502-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1339 O_BomoN4EE11205_complete:A_BomoN4EE_TR29291_c0_g2_i3
586bp
 PREDICTED:_zinc_finger_protein_502-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1340 O_BomoN4EE11206_complete:A_BomoN4EE_TR29293_c0_g1_i1
1023bp
 PREDICTED:_uncharacterized_protein_LOC101746298_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005677 C chromatin silencing complex
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0031507 P heterochromatin assembly
GO:0045892 P negative regulation of transcription, DNA-templated
1341 O_BomoN4EE11207_complete:A_BomoN4EE_TR29293_c0_g1_i2
1936bp
 PREDICTED:_uncharacterized_protein_LOC101746298_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005677 C chromatin silencing complex
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0031507 P heterochromatin assembly
GO:0045892 P negative regulation of transcription, DNA-templated
1342 O_BomoN4EE11208_complete:A_BomoN4EE_TR29293_c0_g1_i2
146bp
1343 O_BomoN4EE11209_complete:A_BomoN4EE_TR29293_c0_g1_i2
119bp
1344 O_BomoN4EE1120_5prime_partial:A_BomoN4EE_TR15626_c0_g1_i1
399bp
 PREDICTED:_protein_msta,_isoform_B_[Bombyx_mori]
GO:0008168 F methyltransferase activity
GO:0010629 P negative regulation of gene expression
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0042826 F histone deacetylase binding
1345 O_BomoN4EE11210_complete:A_BomoN4EE_TR29293_c0_g1_i3
1057bp
 PREDICTED:_uncharacterized_protein_LOC101746298_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005677 C chromatin silencing complex
GO:0005694 C chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0031507 P heterochromatin assembly
GO:0045892 P negative regulation of transcription, DNA-templated
1346 O_BomoN4EE11211_complete:A_BomoN4EE_TR29294_c0_g1_i1
101bp
 PREDICTED:_geranylgeranyl_pyrophosphate_synthase_[Plutella_xylostella]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006695 P cholesterol biosynthetic process
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
1347 O_BomoN4EE11212_complete:A_BomoN4EE_TR29294_c0_g1_i3
296bp
 geranylgeranyl_diphosphate_synthase_[Choristoneura_fumiferana]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006695 P cholesterol biosynthetic process
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
1348 O_BomoN4EE11213_complete:A_BomoN4EE_TR29294_c0_g1_i4
222bp
 geranylgeranyl_diphosphate_synthase_[Choristoneura_fumiferana]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
1349 O_BomoN4EE11214_complete:A_BomoN4EE_TR29294_c0_g1_i5
132bp
 PREDICTED:_geranylgeranyl_pyrophosphate_synthase_[Plutella_xylostella]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006695 P cholesterol biosynthetic process
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
1350 O_BomoN4EE11215_complete:A_BomoN4EE_TR29294_c0_g1_i6
314bp
 geranylgeranyl_diphosphate_synthase_[Choristoneura_fumiferana]
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006695 P cholesterol biosynthetic process
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
previous next from show/51699

- SilkBase 1999-2023 -