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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9511 O_BomoMG26666_complete:A_BomoMG_comp42046_c0_seq1
117bp
9512 O_BomoMG26667_complete:A_BomoMG_comp42087_c0_seq1
134bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
9513 O_BomoMG26668_complete:A_BomoMG_comp42095_c0_seq1
258bp
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
9514 O_BomoMG2666_3prime_partial:A_BomoMG_comp22157_c0_seq1
381bp
 PREDICTED:_putative_methyltransferase_C9orf114_[Papilio_machaon]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005575 C cellular_component
GO:0005694 C chromosome
GO:0007049 P cell cycle
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0044822 F RNA binding
GO:0051301 P cell division
9515 O_BomoMG26671_complete:A_BomoMG_comp42098_c0_seq1
333bp
GO:0004365 F glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0006006 P glucose metabolic process
GO:0006096 P glycolytic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661 F NADP binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
9516 O_BomoMG26672_complete:A_BomoMG_comp42121_c0_seq1
747bp
GO:0004177 F aminopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
9517 O_BomoMG26674_complete:A_BomoMG_comp42144_c0_seq1
141bp
GO:0000022 P mitotic spindle elongation
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0017022 F myosin binding
GO:0022008 P neurogenesis
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0070180 F large ribosomal subunit rRNA binding
9518 O_BomoMG26675_3prime_partial:A_BomoMG_comp42144_c0_seq1
138bp
9519 O_BomoMG26676_5prime_partial:A_BomoMG_comp42148_c0_seq1
287bp
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030574 P collagen catabolic process
9520 O_BomoMG26677_5prime_partial:A_BomoMG_comp42151_c0_seq1
135bp
GO:0003729 F mRNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
9521 O_BomoMG26678_5prime_partial:A_BomoMG_comp42159_c0_seq1
232bp
9522 O_BomoMG26679_complete:A_BomoMG_comp42176_c0_seq1
323bp
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005739 C mitochondrion
GO:0006574 P valine catabolic process
GO:0008442 F 3-hydroxyisobutyrate dehydrogenase activity
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
9523 O_BomoMG2667_internal:A_BomoMG_comp22159_c0_seq1
1035bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
9524 O_BomoMG26681_5prime_partial:A_BomoMG_comp42184_c0_seq1
171bp
GO:0000028 P ribosomal small subunit assembly
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
9525 O_BomoMG26682_complete:A_BomoMG_comp42189_c0_seq1
201bp
GO:0000022 P mitotic spindle elongation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0051298 P centrosome duplication
9526 O_BomoMG26683_complete:A_BomoMG_comp42194_c0_seq1
613bp
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0006413 P translational initiation
GO:0008022 F protein C-terminus binding
GO:0008143 F poly(A) binding
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0008494 F translation activator activity
GO:0010494 C cytoplasmic stress granule
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0036464 C cytoplasmic ribonucleoprotein granule
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0045070 P positive regulation of viral genome replication
GO:0045727 P positive regulation of translation
GO:0048255 P mRNA stabilization
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
9527 O_BomoMG26684_5prime_partial:A_BomoMG_comp42201_c0_seq1
218bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
9528 O_BomoMG26685_5prime_partial:A_BomoMG_comp42208_c0_seq1
168bp
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
9529 O_BomoMG26686_complete:A_BomoMG_comp42210_c0_seq1
248bp
GO:0005737 C cytoplasm
GO:0019904 F protein domain specific binding
9530 O_BomoMG26687_complete:A_BomoMG_comp42220_c0_seq1
264bp
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0019843 F rRNA binding
GO:0030529 C ribonucleoprotein complex
9531 O_BomoMG26690_5prime_partial:A_BomoMG_comp42239_c0_seq1
223bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
9532 O_BomoMG26691_complete:A_BomoMG_comp42240_c0_seq1
295bp
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9533 O_BomoMG26692_complete:A_BomoMG_comp42243_c0_seq1
666bp
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006885 P regulation of pH
GO:0015297 F antiporter activity
GO:0015299 F solute:proton antiporter activity
GO:0015385 F sodium:proton antiporter activity
GO:0015386 F potassium:proton antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035725 P sodium ion transmembrane transport
GO:0055038 C recycling endosome membrane
GO:0055085 P transmembrane transport
GO:0071805 P potassium ion transmembrane transport
GO:1902600 P proton transmembrane transport
9534 O_BomoMG26693_complete:A_BomoMG_comp42243_c0_seq1
373bp
9535 O_BomoMG26695_complete:A_BomoMG_comp42250_c0_seq1
269bp
GO:0000022 P mitotic spindle elongation
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0007052 P mitotic spindle organization
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0042254 P ribosome biogenesis
GO:0051297 P centrosome cycle
GO:0051298 P centrosome duplication
9536 O_BomoMG26697_5prime_partial:A_BomoMG_comp42252_c0_seq1
153bp
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005840 C ribosome
GO:0005875 C microtubule associated complex
GO:0006412 P translation
GO:0006464 P cellular protein modification process
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007219 P Notch signaling pathway
GO:0016567 P protein ubiquitination
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0031386 F protein tag
9537 O_BomoMG26698_complete:A_BomoMG_comp42253_c0_seq1
254bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
9538 O_BomoMG2669_internal:A_BomoMG_comp22159_c1_seq1
380bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
9539 O_BomoMG266_3prime_partial:A_BomoMG_comp17579_c1_seq1
128bp
 PREDICTED:_kinesin-like_protein_unc-104_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0047496 P vesicle transport along microtubule
GO:0048489 P synaptic vesicle transport
9540 O_BomoMG26700_5prime_partial:A_BomoMG_comp42281_c0_seq1
256bp
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
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