SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8941 O_BomoMG25589_complete:A_BomoMG_comp41120_c0_seq18
384bp
8942 O_BomoMG25592_3prime_partial:A_BomoMG_comp41120_c1_seq3
397bp
8943 O_BomoMG25594_3prime_partial:A_BomoMG_comp41120_c1_seq4
397bp
8944 O_BomoMG2559_5prime_partial:A_BomoMG_comp21965_c0_seq1
273bp
 PREDICTED:_protein_sprint_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0017016 F small GTPase binding
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019901 F protein kinase binding
GO:0030139 C endocytic vesicle
GO:0030971 F receptor tyrosine kinase binding
GO:0032483 P regulation of Rab protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048675 P axon extension
8945 O_BomoMG255_complete:A_BomoMG_comp17565_c0_seq2
110bp
 PREDICTED:_DET1_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
8946 O_BomoMG25611_complete:A_BomoMG_comp41123_c0_seq1
244bp
GO:0000276 C mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006909 P phagocytosis
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045263 C proton-transporting ATP synthase complex, coupling factor F(o)
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
8947 O_BomoMG25614_complete:A_BomoMG_comp41123_c1_seq2
248bp
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015992 P proton transmembrane transport
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
8948 O_BomoMG2561_5prime_partial:A_BomoMG_comp21967_c0_seq1
519bp
 PREDICTED:_pre-rRNA-processing_protein_TSR1_homolog_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0040018 P positive regulation of multicellular organism growth
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0090277 P positive regulation of peptide hormone secretion
8949 O_BomoMG25621_complete:A_BomoMG_comp41124_c1_seq3
647bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8950 O_BomoMG25625_complete:A_BomoMG_comp41124_c1_seq5
110bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
8951 O_BomoMG25628_5prime_partial:A_BomoMG_comp41124_c1_seq10
180bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
8952 O_BomoMG2562_3prime_partial:A_BomoMG_comp21967_c0_seq2
285bp
 PREDICTED:_pre-rRNA-processing_protein_TSR1_homolog_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0022008 P neurogenesis
GO:0040018 P positive regulation of multicellular organism growth
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0090277 P positive regulation of peptide hormone secretion
8953 O_BomoMG25630_complete:A_BomoMG_comp41125_c0_seq2
317bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006091 P generation of precursor metabolites and energy
GO:0006412 P translation
GO:0006810 P transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8954 O_BomoMG25631_5prime_partial:A_BomoMG_comp41125_c0_seq3
199bp
8955 O_BomoMG25633_5prime_partial:A_BomoMG_comp41125_c0_seq4
304bp
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902476 P chloride transmembrane transport
8956 O_BomoMG25635_5prime_partial:A_BomoMG_comp41125_c0_seq8
125bp
8957 O_BomoMG25636_complete:A_BomoMG_comp41125_c0_seq9
317bp
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006091 P generation of precursor metabolites and energy
GO:0006412 P translation
GO:0006810 P transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8958 O_BomoMG2563_internal:A_BomoMG_comp21968_c0_seq1
173bp
 PREDICTED:_nuclear_pore_complex_protein_Nup155_[Bombyx_mori]
GO:0000972 P transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006998 P nuclear envelope organization
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031965 C nuclear membrane
GO:0036228 P protein localization to nuclear inner membrane
GO:0044611 C nuclear pore inner ring
GO:0051028 P mRNA transport
GO:0075733 P intracellular transport of virus
GO:0086014 P atrial cardiac muscle cell action potential
GO:1900034 P regulation of cellular response to heat
8959 O_BomoMG25640_complete:A_BomoMG_comp41125_c0_seq15
209bp
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902476 P chloride transmembrane transport
8960 O_BomoMG25643_5prime_partial:A_BomoMG_comp41125_c0_seq16
117bp
8961 O_BomoMG25644_complete:A_BomoMG_comp41125_c0_seq18
209bp
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902476 P chloride transmembrane transport
8962 O_BomoMG25648_5prime_partial:A_BomoMG_comp41125_c0_seq19
199bp
8963 O_BomoMG25649_complete:A_BomoMG_comp41126_c0_seq1
538bp
8964 O_BomoMG25650_3prime_partial:A_BomoMG_comp41126_c0_seq1
107bp
8965 O_BomoMG25651_3prime_partial:A_BomoMG_comp41126_c0_seq2
476bp
8966 O_BomoMG25652_complete:A_BomoMG_comp41127_c0_seq1
197bp
GO:0005575 C cellular_component
8967 O_BomoMG25653_5prime_partial:A_BomoMG_comp41127_c5_seq17
191bp
8968 O_BomoMG25654_internal:A_BomoMG_comp41128_c0_seq2
346bp
GO:0000045 P autophagosome assembly
GO:0000407 C phagophore assembly site
GO:0005515 F protein binding
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016192 P vesicle-mediated transport
GO:0030242 P autophagy of peroxisome
GO:0031410 C cytoplasmic vesicle
GO:0032258 P cytoplasm to vacuole transport by the Cvt pathway
GO:0034497 P protein localization to phagophore assembly site
GO:0044804 P autophagy of nucleus
GO:1990072 C TRAPPIII protein complex
8969 O_BomoMG25656_complete:A_BomoMG_comp41128_c1_seq1
555bp
GO:0003674 F molecular_function
GO:0006879 P cellular iron ion homeostasis
GO:0009306 P protein secretion
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
8970 O_BomoMG25659_complete:A_BomoMG_comp41128_c2_seq11
538bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0044822 F RNA binding
previous next from show/16985

- SilkBase 1999-2023 -