SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8431 O_BomoMG24660_complete:A_BomoMG_comp41086_c8_seq1
294bp
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0019310 P inositol catabolic process
GO:0046872 F metal ion binding
GO:0050113 F inositol oxygenase activity
GO:0055114 P obsolete oxidation-reduction process
8432 O_BomoMG24661_complete:A_BomoMG_comp41086_c8_seq3
294bp
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0019310 P inositol catabolic process
GO:0046872 F metal ion binding
GO:0050113 F inositol oxygenase activity
GO:0055114 P obsolete oxidation-reduction process
8433 O_BomoMG24663_5prime_partial:A_BomoMG_comp41086_c8_seq7
254bp
GO:0000272 P polysaccharide catabolic process
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004568 F chitinase activity
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005975 P carbohydrate metabolic process
GO:0006030 P chitin metabolic process
GO:0006032 P chitin catabolic process
GO:0008061 F chitin binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
8434 O_BomoMG24665_complete:A_BomoMG_comp41087_c0_seq2
447bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
8435 O_BomoMG24666_5prime_partial:A_BomoMG_comp41087_c0_seq4
757bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
8436 O_BomoMG24667_5prime_partial:A_BomoMG_comp41088_c0_seq1
457bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8437 O_BomoMG24668_5prime_partial:A_BomoMG_comp41088_c0_seq2
326bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005198 F structural molecule activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016032 P viral process
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039702 P viral budding via host ESCRT complex
GO:0042025 C host cell nucleus
GO:0046755 P viral budding
GO:0046872 F metal ion binding
8438 O_BomoMG24669_complete:A_BomoMG_comp41088_c0_seq2
173bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8439 O_BomoMG2466_complete:A_BomoMG_comp21846_c0_seq1
301bp
 hypothetical_protein_KGM_01857_[Danaus_plexippus]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0055114 P obsolete oxidation-reduction process
8440 O_BomoMG24670_internal:A_BomoMG_comp41088_c0_seq5
812bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8441 O_BomoMG24671_5prime_partial:A_BomoMG_comp41088_c0_seq6
269bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8442 O_BomoMG24672_5prime_partial:A_BomoMG_comp41088_c0_seq7
757bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8443 O_BomoMG24673_complete:A_BomoMG_comp41088_c0_seq10
344bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8444 O_BomoMG24674_5prime_partial:A_BomoMG_comp41088_c0_seq10
326bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005198 F structural molecule activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016032 P viral process
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039702 P viral budding via host ESCRT complex
GO:0042025 C host cell nucleus
GO:0046755 P viral budding
GO:0046872 F metal ion binding
8445 O_BomoMG24675_5prime_partial:A_BomoMG_comp41088_c0_seq11
326bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005198 F structural molecule activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016032 P viral process
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0019028 C viral capsid
GO:0019076 P viral release from host cell
GO:0020002 C host cell plasma membrane
GO:0030430 C host cell cytoplasm
GO:0033644 C host cell membrane
GO:0039702 P viral budding via host ESCRT complex
GO:0042025 C host cell nucleus
GO:0046755 P viral budding
GO:0046872 F metal ion binding
8446 O_BomoMG24676_3prime_partial:A_BomoMG_comp41088_c0_seq11
234bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8447 O_BomoMG24677_5prime_partial:A_BomoMG_comp41088_c0_seq12
945bp
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8448 O_BomoMG24678_complete:A_BomoMG_comp41089_c0_seq1
1230bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
8449 O_BomoMG24679_complete:A_BomoMG_comp41089_c0_seq1
490bp
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
8450 O_BomoMG2467_complete:A_BomoMG_comp21848_c0_seq1
133bp
 PREDICTED:_transmembrane_protein_234_homolog_isoform_X3_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
8451 O_BomoMG24680_complete:A_BomoMG_comp41089_c0_seq2
1230bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
8452 O_BomoMG24681_complete:A_BomoMG_comp41089_c0_seq2
490bp
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
8453 O_BomoMG24682_internal:A_BomoMG_comp41090_c0_seq2
197bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
8454 O_BomoMG24683_5prime_partial:A_BomoMG_comp41090_c0_seq3
618bp
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8455 O_BomoMG24684_5prime_partial:A_BomoMG_comp41090_c0_seq4
362bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
8456 O_BomoMG24686_5prime_partial:A_BomoMG_comp41090_c0_seq5
516bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
8457 O_BomoMG24687_5prime_partial:A_BomoMG_comp41090_c0_seq5
271bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
8458 O_BomoMG24688_complete:A_BomoMG_comp41090_c0_seq6
260bp
8459 O_BomoMG24689_internal:A_BomoMG_comp41090_c0_seq7
170bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
8460 O_BomoMG2468_5prime_partial:A_BomoMG_comp21853_c0_seq1
653bp
 PREDICTED:_sorting_nexin-29-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
previous next from show/16985

- SilkBase 1999-2023 -