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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8221 O_BomoMG24167_5prime_partial:A_BomoMG_comp41059_c0_seq7
492bp
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
8222 O_BomoMG24169_complete:A_BomoMG_comp41059_c0_seq11
403bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8223 O_BomoMG2416_3prime_partial:A_BomoMG_comp21779_c0_seq1
266bp
 PREDICTED:_WD_repeat-containing_protein_74_[Bombyx_mori]
GO:0001825 P blastocyst formation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016070 P RNA metabolic process
GO:0030687 C preribosome, large subunit precursor
GO:0042273 P ribosomal large subunit biogenesis
8224 O_BomoMG24171_5prime_partial:A_BomoMG_comp41059_c0_seq12
492bp
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
8225 O_BomoMG24173_3prime_partial:A_BomoMG_comp41059_c0_seq13
521bp
8226 O_BomoMG24174_complete:A_BomoMG_comp41059_c0_seq15
309bp
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
8227 O_BomoMG24176_internal:A_BomoMG_comp41060_c4_seq3
101bp
8228 O_BomoMG24177_internal:A_BomoMG_comp41060_c6_seq1
115bp
8229 O_BomoMG24178_5prime_partial:A_BomoMG_comp41061_c0_seq1
845bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8230 O_BomoMG24179_3prime_partial:A_BomoMG_comp41061_c0_seq2
857bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8231 O_BomoMG2417_3prime_partial:A_BomoMG_comp21784_c0_seq1
303bp
 PREDICTED:_TBC1_domain_family_member_5_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0010008 C endosome membrane
GO:0010508 P positive regulation of autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030122 C AP-2 adaptor complex
GO:0030904 C retromer complex
GO:0031338 P regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0035612 F AP-2 adaptor complex binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042594 P response to starvation
GO:0090630 P activation of GTPase activity
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1902017 P regulation of cilium assembly
GO:1990316 C Atg1/ULK1 kinase complex
8232 O_BomoMG24180_complete:A_BomoMG_comp41061_c0_seq2
281bp
8233 O_BomoMG24181_internal:A_BomoMG_comp41061_c0_seq3
654bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8234 O_BomoMG24182_complete:A_BomoMG_comp41061_c0_seq4
1048bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
8235 O_BomoMG24183_complete:A_BomoMG_comp41061_c0_seq4
281bp
8236 O_BomoMG24184_complete:A_BomoMG_comp41062_c0_seq6
230bp
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0006616 P SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
8237 O_BomoMG24187_5prime_partial:A_BomoMG_comp41062_c0_seq8
681bp
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0051301 P cell division
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
8238 O_BomoMG24191_complete:A_BomoMG_comp41062_c0_seq17
230bp
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0006616 P SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
8239 O_BomoMG24196_complete:A_BomoMG_comp41062_c5_seq1
594bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007399 P nervous system development
GO:0021987 P cerebral cortex development
GO:0048813 P dendrite morphogenesis
8240 O_BomoMG24198_complete:A_BomoMG_comp41062_c5_seq2
513bp
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007399 P nervous system development
GO:0021987 P cerebral cortex development
GO:0048813 P dendrite morphogenesis
8241 O_BomoMG2419_complete:A_BomoMG_comp21784_c0_seq2
274bp
 PREDICTED:_TBC1_domain_family_member_5_[Bombyx_mori]
GO:0002092 P positive regulation of receptor internalization
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005776 C autophagosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0010008 C endosome membrane
GO:0010508 P positive regulation of autophagy
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030122 C AP-2 adaptor complex
GO:0030904 C retromer complex
GO:0031338 P regulation of vesicle fusion
GO:0031410 C cytoplasmic vesicle
GO:0035612 F AP-2 adaptor complex binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042594 P response to starvation
GO:0090630 P activation of GTPase activity
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1902017 P regulation of cilium assembly
GO:1990316 C Atg1/ULK1 kinase complex
8242 O_BomoMG241_3prime_partial:A_BomoMG_comp17539_c0_seq1
105bp
 PREDICTED:_uncharacterized_protein_LOC105390905_[Plutella_xylostella]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003334 P keratinocyte development
GO:0003382 P epithelial cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007409 P axonogenesis
GO:0008285 P negative regulation of cell population proliferation
GO:0009791 P post-embryonic development
GO:0010468 P regulation of gene expression
GO:0010837 P regulation of keratinocyte proliferation
GO:0019216 P regulation of lipid metabolic process
GO:0021773 P striatal medium spiny neuron differentiation
GO:0021902 P commitment of neuronal cell to specific neuron type in forebrain
GO:0021953 P central nervous system neuron differentiation
GO:0022008 P neurogenesis
GO:0031077 P post-embryonic camera-type eye development
GO:0033077 P T cell differentiation in thymus
GO:0033153 P T cell receptor V(D)J recombination
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0043005 C neuron projection
GO:0043066 P negative regulation of apoptotic process
GO:0043368 P positive T cell selection
GO:0043565 F sequence-specific DNA binding
GO:0043588 P skin development
GO:0044212 F transcription cis-regulatory region binding
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046632 P alpha-beta T cell differentiation
GO:0046872 F metal ion binding
GO:0048538 P thymus development
GO:0071678 P olfactory bulb axon guidance
8243 O_BomoMG2420_complete:A_BomoMG_comp21786_c0_seq1
291bp
 putative_transcription_factor_TFIIH-subunit_[Danaus_plexippus]
GO:0000439 C transcription factor TFIIH core complex
GO:0003684 F damaged DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006412 P translation
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008135 F translation factor activity, RNA binding
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0046872 F metal ion binding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
8244 O_BomoMG2421_5prime_partial:A_BomoMG_comp21787_c0_seq1
138bp
 PREDICTED:_endothelin-converting_enzyme_1_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016486 P peptide hormone processing
GO:0016787 F hydrolase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
8245 O_BomoMG24224_3prime_partial:A_BomoMG_comp41066_c1_seq1
133bp
GO:0005575 C cellular_component
GO:0006457 P protein folding
GO:0019538 P protein metabolic process
GO:0042802 F identical protein binding
GO:0051087 F chaperone binding
8246 O_BomoMG24226_3prime_partial:A_BomoMG_comp41066_c1_seq2
177bp
GO:0005575 C cellular_component
GO:0006457 P protein folding
GO:0019538 P protein metabolic process
GO:0042802 F identical protein binding
GO:0051087 F chaperone binding
8247 O_BomoMG24228_complete:A_BomoMG_comp41066_c1_seq3
182bp
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0042802 F identical protein binding
8248 O_BomoMG24229_3prime_partial:A_BomoMG_comp41066_c1_seq3
133bp
GO:0005575 C cellular_component
GO:0006457 P protein folding
GO:0019538 P protein metabolic process
GO:0042802 F identical protein binding
GO:0051087 F chaperone binding
8249 O_BomoMG2422_complete:A_BomoMG_comp21788_c0_seq2
290bp
 PREDICTED:_uncharacterized_protein_LOC101746654_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046982 F protein heterodimerization activity
8250 O_BomoMG24231_3prime_partial:A_BomoMG_comp41066_c1_seq4
133bp
GO:0005575 C cellular_component
GO:0006457 P protein folding
GO:0019538 P protein metabolic process
GO:0042802 F identical protein binding
GO:0051087 F chaperone binding
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