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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
61 O_BomoMG10098_5prime_partial:A_BomoMG_comp38001_c0_seq2
325bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
62 O_BomoMG10099_5prime_partial:A_BomoMG_comp38001_c0_seq2
102bp
 PREDICTED:_nucleoporin-like_protein_2_[Papilio_polytes]
63 O_BomoMG1009_complete:A_BomoMG_comp19711_c0_seq1
182bp
 eIF2B-beta_protein_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0007417 P central nervous system development
GO:0014003 P oligodendrocyte development
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0042552 P myelination
GO:0043547 P positive regulation of GTPase activity
GO:0044237 P cellular metabolic process
GO:0046523 F S-methyl-5-thioribose-1-phosphate isomerase activity
GO:0051716 P cellular response to stimulus
64 O_BomoMG10100_5prime_partial:A_BomoMG_comp38001_c0_seq3
325bp
 PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
65 O_BomoMG10101_5prime_partial:A_BomoMG_comp38003_c0_seq1
201bp
 DNA-directed_RNA_polymerase_III_subunit_RPC3_[Papilio_xuthus]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006383 P transcription by RNA polymerase III
GO:0032481 P positive regulation of type I interferon production
GO:0032728 P positive regulation of interferon-beta production
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
66 O_BomoMG10102_3prime_partial:A_BomoMG_comp38004_c0_seq1
340bp
 PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
67 O_BomoMG10103_5prime_partial:A_BomoMG_comp38004_c0_seq1
280bp
 PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0070939 C Dsl1/NZR complex
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
68 O_BomoMG10105_3prime_partial:A_BomoMG_comp38007_c0_seq1
275bp
 PREDICTED:_rab_GTPase-binding_effector_protein_1_isoform_X1_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0008083 F growth factor activity
GO:0015031 P protein transport
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0030139 C endocytic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0055037 C recycling endosome
69 O_BomoMG10108_complete:A_BomoMG_comp38009_c0_seq1
532bp
 PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0008152 P metabolic process
GO:0008218 P bioluminescence
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0047077 F Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
GO:0055114 P obsolete oxidation-reduction process
70 O_BomoMG10109_complete:A_BomoMG_comp38009_c0_seq3
532bp
 PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0005524 F ATP binding
GO:0005777 C peroxisome
GO:0008152 P metabolic process
GO:0008218 P bioluminescence
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0047077 F Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
GO:0055114 P obsolete oxidation-reduction process
71 O_BomoMG1010_complete:A_BomoMG_comp19711_c0_seq1
149bp
 eIF2B-beta_protein_[Bombyx_mori]
GO:0003743 F translation initiation factor activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005851 C eukaryotic translation initiation factor 2B complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0007417 P central nervous system development
GO:0014003 P oligodendrocyte development
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0042552 P myelination
GO:0043547 P positive regulation of GTPase activity
GO:0044237 P cellular metabolic process
GO:0046523 F S-methyl-5-thioribose-1-phosphate isomerase activity
GO:0051716 P cellular response to stimulus
72 O_BomoMG10110_3prime_partial:A_BomoMG_comp38011_c0_seq2
194bp
 CRAL-TRIO_domain-containing_protein,_partial_[Manduca_sexta]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
73 O_BomoMG10111_5prime_partial:A_BomoMG_comp38014_c0_seq1
117bp
 PREDICTED:_probable_methylthioribulose-1-phosphate_dehydratase_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016829 F lyase activity
GO:0019284 P L-methionine salvage from S-adenosylmethionine
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0046570 F methylthioribulose 1-phosphate dehydratase activity
GO:0046872 F metal ion binding
74 O_BomoMG10112_3prime_partial:A_BomoMG_comp38014_c1_seq1
121bp
 PREDICTED:_probable_methylthioribulose-1-phosphate_dehydratase_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016829 F lyase activity
GO:0019284 P L-methionine salvage from S-adenosylmethionine
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0046570 F methylthioribulose 1-phosphate dehydratase activity
GO:0046872 F metal ion binding
75 O_BomoMG10113_3prime_partial:A_BomoMG_comp38014_c1_seq2
121bp
 PREDICTED:_probable_methylthioribulose-1-phosphate_dehydratase_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0016829 F lyase activity
GO:0019284 P L-methionine salvage from S-adenosylmethionine
GO:0019509 P L-methionine salvage from methylthioadenosine
GO:0046570 F methylthioribulose 1-phosphate dehydratase activity
GO:0046872 F metal ion binding
76 O_BomoMG10114_complete:A_BomoMG_comp38015_c0_seq1
723bp
 PREDICTED:_putative_sodium-coupled_neutral_amino_acid_transporter_10_isoform_X3_[Papilio_machaon]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006865 P amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
77 O_BomoMG10116_complete:A_BomoMG_comp38015_c0_seq2
901bp
 PREDICTED:_putative_sodium-coupled_neutral_amino_acid_transporter_10_isoform_X1_[Papilio_machaon]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006865 P amino acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
78 O_BomoMG10119_complete:A_BomoMG_comp38016_c0_seq1
369bp
 PREDICTED:_tetratricopeptide_repeat_protein_17-like_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0030041 P actin filament polymerization
GO:0044782 P cilium organization
79 O_BomoMG10121_internal:A_BomoMG_comp38019_c0_seq1
114bp
 PREDICTED:_poly(rC)-binding_protein_3_isoform_X2_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016071 P mRNA metabolic process
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
80 O_BomoMG10122_3prime_partial:A_BomoMG_comp38019_c0_seq2
256bp
 PREDICTED:_poly(rC)-binding_protein_3_isoform_X2_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016071 P mRNA metabolic process
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
81 O_BomoMG10124_3prime_partial:A_BomoMG_comp38019_c0_seq3
261bp
 PREDICTED:_poly(rC)-binding_protein_3_isoform_X2_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016071 P mRNA metabolic process
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
82 O_BomoMG10126_complete:A_BomoMG_comp38020_c0_seq1
162bp
 PREDICTED:_protein_phosphatase_inhibitor_2-like_[Bombyx_mori]
GO:0000164 C protein phosphatase type 1 complex
GO:0004864 F protein phosphatase inhibitor activity
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0009966 P regulation of signal transduction
GO:0043086 P negative regulation of catalytic activity
GO:0043666 P regulation of phosphoprotein phosphatase activity
83 O_BomoMG10127_complete:A_BomoMG_comp38021_c0_seq1
748bp
 PREDICTED:_elongation_factor_G,_mitochondrial_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0070125 P mitochondrial translational elongation
84 O_BomoMG10129_complete:A_BomoMG_comp38024_c0_seq1
109bp
 PREDICTED:_E3_ubiquitin-protein_ligase_ZNRF2_isoform_X2_[Papilio_polytes]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0008270 F zinc ion binding
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030054 C cell junction
GO:0042734 C presynaptic membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
85 O_BomoMG10130_5prime_partial:A_BomoMG_comp38024_c0_seq3
129bp
 PREDICTED:_E3_ubiquitin-protein_ligase_znrf1_isoform_X1_[Papilio_polytes]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0008270 F zinc ion binding
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030054 C cell junction
GO:0042734 C presynaptic membrane
GO:0045202 C synapse
GO:0046872 F metal ion binding
86 O_BomoMG10132_internal:A_BomoMG_comp38026_c0_seq1
226bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_helicase_domino_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
87 O_BomoMG10133_internal:A_BomoMG_comp38026_c0_seq2
249bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_helicase_domino_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
88 O_BomoMG10134_complete:A_BomoMG_comp38028_c0_seq1
117bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_9_[Amyelois_transitella]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016592 C mediator complex
GO:0019233 P sensory perception of pain
89 O_BomoMG10137_internal:A_BomoMG_comp38029_c0_seq1
112bp
 putative_eukaryotic_translation_initiation_factor_4_gamma,_2_[Danaus_plexippus]
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0008135 F translation factor activity, RNA binding
GO:0016020 C membrane
GO:0016281 C eukaryotic translation initiation factor 4F complex
GO:0044822 F RNA binding
90 O_BomoMG10139_complete:A_BomoMG_comp38030_c0_seq1
326bp
 PREDICTED:_cyclin-H_[Amyelois_transitella]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005675 C transcription factor TFIIH holo complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006361 P transcription initiation from RNA polymerase I promoter
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006363 P termination of RNA polymerase I transcription
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016538 F cyclin-dependent protein serine/threonine kinase regulator activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0045737 P positive regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070985 C transcription factor TFIIK complex
GO:1901409 P positive regulation of phosphorylation of RNA polymerase II C-terminal domain
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