SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5911 O_BomoMG20042_3prime_partial:A_BomoMG_comp40674_c0_seq2
427bp
GO:0005737 C cytoplasm
GO:0007528 P neuromuscular junction development
GO:0007614 P short-term memory
GO:0008104 P protein localization
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0042462 P eye photoreceptor cell development
GO:0042675 P compound eye cone cell differentiation
GO:0043025 C neuronal cell body
GO:0043204 C perikaryon
GO:0051018 F protein kinase A binding
5912 O_BomoMG20044_internal:A_BomoMG_comp40674_c0_seq3
1278bp
GO:0005737 C cytoplasm
GO:0016020 C membrane
5913 O_BomoMG20052_complete:A_BomoMG_comp40675_c0_seq1
204bp
GO:0000145 C exocyst
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006893 P Golgi to plasma membrane transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007409 P axonogenesis
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0030670 C phagocytic vesicle membrane
GO:0030859 P polarized epithelial cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045200 P establishment of neuroblast polarity
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061467 P protein localization to basolateral plasma membrane
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
GO:0072372 C cilium
GO:0072659 P protein localization to plasma membrane
GO:0097051 P establishment of protein localization to endoplasmic reticulum membrane
5914 O_BomoMG20054_complete:A_BomoMG_comp40675_c0_seq2
204bp
GO:0000145 C exocyst
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006893 P Golgi to plasma membrane transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007409 P axonogenesis
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0030670 C phagocytic vesicle membrane
GO:0030859 P polarized epithelial cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045200 P establishment of neuroblast polarity
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061467 P protein localization to basolateral plasma membrane
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
GO:0072372 C cilium
GO:0072659 P protein localization to plasma membrane
GO:0097051 P establishment of protein localization to endoplasmic reticulum membrane
5915 O_BomoMG20056_complete:A_BomoMG_comp40675_c0_seq3
204bp
GO:0000145 C exocyst
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006893 P Golgi to plasma membrane transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007409 P axonogenesis
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0030670 C phagocytic vesicle membrane
GO:0030859 P polarized epithelial cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045200 P establishment of neuroblast polarity
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061467 P protein localization to basolateral plasma membrane
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
GO:0072372 C cilium
GO:0072659 P protein localization to plasma membrane
GO:0097051 P establishment of protein localization to endoplasmic reticulum membrane
5916 O_BomoMG20058_complete:A_BomoMG_comp40675_c0_seq4
204bp
GO:0000145 C exocyst
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006893 P Golgi to plasma membrane transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007409 P axonogenesis
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0019003 F GDP binding
GO:0030659 C cytoplasmic vesicle membrane
GO:0030670 C phagocytic vesicle membrane
GO:0030859 P polarized epithelial cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045200 P establishment of neuroblast polarity
GO:0055037 C recycling endosome
GO:0055038 C recycling endosome membrane
GO:0061467 P protein localization to basolateral plasma membrane
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
GO:0072372 C cilium
GO:0072659 P protein localization to plasma membrane
GO:0097051 P establishment of protein localization to endoplasmic reticulum membrane
5917 O_BomoMG2005_complete:A_BomoMG_comp21151_c0_seq1
226bp
 PREDICTED:_proteasome_subunit_beta_type-6_[Papilio_machaon]
GO:0000165 P MAPK cascade
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0002223 P stimulatory C-type lectin receptor signaling pathway
GO:0002479 P antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0006521 P regulation of cellular amino acid metabolic process
GO:0008233 F peptidase activity
GO:0016032 P viral process
GO:0016787 F hydrolase activity
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0033209 P tumor necrosis factor-mediated signaling pathway
GO:0038061 P NIK/NF-kappaB signaling
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043488 P regulation of mRNA stability
GO:0050852 P T cell receptor signaling pathway
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0060071 P Wnt signaling pathway, planar cell polarity pathway
GO:0070062 C extracellular exosome
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090263 P positive regulation of canonical Wnt signaling pathway
5918 O_BomoMG20060_5prime_partial:A_BomoMG_comp40676_c0_seq3
264bp
GO:0000166 F nucleotide binding
GO:0000285 F 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0012506 C vesicle membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016307 F phosphatidylinositol phosphate kinase activity
GO:0016308 F 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0046488 P phosphatidylinositol metabolic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046872 F metal ion binding
GO:0097352 P autophagosome maturation
5919 O_BomoMG20061_5prime_partial:A_BomoMG_comp40677_c0_seq1
457bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5920 O_BomoMG20062_complete:A_BomoMG_comp40677_c0_seq1
316bp
5921 O_BomoMG20066_complete:A_BomoMG_comp40677_c0_seq2
327bp
5922 O_BomoMG20068_5prime_partial:A_BomoMG_comp40677_c0_seq3
719bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5923 O_BomoMG20069_3prime_partial:A_BomoMG_comp40677_c0_seq3
490bp
5924 O_BomoMG2006_5prime_partial:A_BomoMG_comp21152_c0_seq1
172bp
 HM00021_[Heliconius_melpomene]
5925 O_BomoMG20072_complete:A_BomoMG_comp40677_c0_seq4
316bp
5926 O_BomoMG20074_5prime_partial:A_BomoMG_comp40677_c0_seq5
398bp
5927 O_BomoMG20075_5prime_partial:A_BomoMG_comp40677_c0_seq6
770bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5928 O_BomoMG20078_complete:A_BomoMG_comp40677_c0_seq8
316bp
5929 O_BomoMG2007_internal:A_BomoMG_comp21152_c1_seq1
288bp
 PREDICTED:_uncharacterized_protein_LOC106119039_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016020 C membrane
GO:0016787 F hydrolase activity
5930 O_BomoMG20080_5prime_partial:A_BomoMG_comp40677_c0_seq9
457bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5931 O_BomoMG20081_complete:A_BomoMG_comp40677_c0_seq9
316bp
5932 O_BomoMG20085_complete:A_BomoMG_comp40677_c0_seq10
327bp
5933 O_BomoMG20087_5prime_partial:A_BomoMG_comp40677_c0_seq11
770bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5934 O_BomoMG2008_internal:A_BomoMG_comp21156_c0_seq1
200bp
 PREDICTED:_RB-associated_KRAB_zinc_finger_protein_[Bombyx_mori]
5935 O_BomoMG20090_5prime_partial:A_BomoMG_comp40677_c0_seq12
398bp
5936 O_BomoMG20091_5prime_partial:A_BomoMG_comp40677_c0_seq13
719bp
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
5937 O_BomoMG20092_3prime_partial:A_BomoMG_comp40677_c0_seq13
490bp
5938 O_BomoMG20095_5prime_partial:A_BomoMG_comp40678_c0_seq1
203bp
GO:0004871 F obsolete signal transducer activity
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0009967 P positive regulation of signal transduction
GO:0016020 C membrane
5939 O_BomoMG20096_5prime_partial:A_BomoMG_comp40679_c0_seq2
294bp
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0033344 P cholesterol efflux
GO:0034041 F ABC-type sterol transporter activity
GO:0042803 F protein homodimerization activity
GO:0046982 F protein heterodimerization activity
GO:0055085 P transmembrane transport
5940 O_BomoMG20098_3prime_partial:A_BomoMG_comp40679_c0_seq3
359bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010888 P negative regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0055037 C recycling endosome
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
previous next from show/16985

- SilkBase 1999-2023 -