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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4771 O_BomoMG18044_3prime_partial:A_BomoMG_comp40415_c0_seq4
495bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0015629 C actin cytoskeleton
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
4772 O_BomoMG18047_5prime_partial:A_BomoMG_comp40417_c0_seq1
168bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
4773 O_BomoMG18048_3prime_partial:A_BomoMG_comp40417_c1_seq1
524bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
4774 O_BomoMG18049_3prime_partial:A_BomoMG_comp40417_c1_seq2
496bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
4775 O_BomoMG18050_complete:A_BomoMG_comp40418_c0_seq1
1075bp
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
4776 O_BomoMG18052_complete:A_BomoMG_comp40418_c0_seq2
2198bp
GO:0001934 P positive regulation of protein phosphorylation
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006417 P regulation of translation
GO:0007283 P spermatogenesis
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0060903 P positive regulation of meiosis I
4777 O_BomoMG18054_complete:A_BomoMG_comp40418_c0_seq3
704bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0010628 P positive regulation of gene expression
GO:0044822 F RNA binding
4778 O_BomoMG18055_5prime_partial:A_BomoMG_comp40419_c2_seq1
194bp
GO:0003735 F structural constituent of ribosome
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
4779 O_BomoMG18056_complete:A_BomoMG_comp40419_c4_seq1
842bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
4780 O_BomoMG18058_5prime_partial:A_BomoMG_comp40419_c4_seq4
916bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
4781 O_BomoMG1805_complete:A_BomoMG_comp20810_c0_seq1
140bp
 ring_and_YY1_binding_protein_[Bombyx_mori]
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
4782 O_BomoMG18060_complete:A_BomoMG_comp40419_c4_seq5
580bp
GO:0003824 F catalytic activity
GO:0004555 F alpha,alpha-trehalase activity
GO:0005886 C plasma membrane
GO:0005991 P trehalose metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016323 C basolateral plasma membrane
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
4783 O_BomoMG18062_internal:A_BomoMG_comp40419_c4_seq9
196bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
4784 O_BomoMG18063_complete:A_BomoMG_comp40419_c4_seq13
189bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
4785 O_BomoMG18066_complete:A_BomoMG_comp40419_c5_seq1
368bp
GO:0003824 F catalytic activity
GO:0004738 F pyruvate dehydrogenase activity
GO:0004739 F pyruvate dehydrogenase (acetyl-transferring) activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005975 P carbohydrate metabolic process
GO:0006006 P glucose metabolic process
GO:0006086 P acetyl-CoA biosynthetic process from pyruvate
GO:0006099 P tricarboxylic acid cycle
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0034604 F pyruvate dehydrogenase (NAD+) activity
GO:0045254 C pyruvate dehydrogenase complex
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
4786 O_BomoMG18068_3prime_partial:A_BomoMG_comp40419_c7_seq1
166bp
4787 O_BomoMG18069_internal:A_BomoMG_comp40419_c8_seq1
143bp
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0036126 C sperm flagellum
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
4788 O_BomoMG18072_5prime_partial:A_BomoMG_comp40420_c0_seq1
281bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4789 O_BomoMG18074_5prime_partial:A_BomoMG_comp40420_c0_seq2
357bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4790 O_BomoMG18076_5prime_partial:A_BomoMG_comp40420_c0_seq3
338bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4791 O_BomoMG18078_complete:A_BomoMG_comp40421_c0_seq1
767bp
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005741 C mitochondrial outer membrane
GO:0005886 C plasma membrane
GO:0006697 P ecdysone biosynthetic process
GO:0007005 P mitochondrion organization
GO:0007029 P endoplasmic reticulum organization
GO:0008053 P mitochondrial fusion
GO:0008344 P adult locomotory behavior
GO:0010636 P positive regulation of mitochondrial fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019896 P axonal transport of mitochondrion
GO:0031966 C mitochondrial membrane
GO:0034389 P lipid droplet organization
GO:0034976 P response to endoplasmic reticulum stress
GO:0070584 P mitochondrion morphogenesis
GO:0090140 P regulation of mitochondrial fission
GO:1904115 C axon cytoplasm
4792 O_BomoMG18080_complete:A_BomoMG_comp40421_c0_seq2
700bp
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005740 C mitochondrial envelope
GO:0005741 C mitochondrial outer membrane
GO:0005886 C plasma membrane
GO:0006697 P ecdysone biosynthetic process
GO:0007005 P mitochondrion organization
GO:0007029 P endoplasmic reticulum organization
GO:0008053 P mitochondrial fusion
GO:0008344 P adult locomotory behavior
GO:0010636 P positive regulation of mitochondrial fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019896 P axonal transport of mitochondrion
GO:0031966 C mitochondrial membrane
GO:0034389 P lipid droplet organization
GO:0034976 P response to endoplasmic reticulum stress
GO:0070584 P mitochondrion morphogenesis
GO:0090140 P regulation of mitochondrial fission
GO:1904115 C axon cytoplasm
4793 O_BomoMG18083_complete:A_BomoMG_comp40422_c0_seq1
345bp
GO:0000139 C Golgi membrane
GO:0001576 P globoside biosynthetic process
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007009 P plasma membrane organization
GO:0008378 F galactosyltransferase activity
GO:0015643 F toxic substance binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0050512 F lactosylceramide 4-alpha-galactosyltransferase activity
GO:0070062 C extracellular exosome
4794 O_BomoMG18086_5prime_partial:A_BomoMG_comp40423_c0_seq3
132bp
4795 O_BomoMG18087_5prime_partial:A_BomoMG_comp40423_c0_seq4
150bp
4796 O_BomoMG18088_5prime_partial:A_BomoMG_comp40424_c0_seq1
219bp
GO:0005576 C extracellular region
GO:0006030 P chitin metabolic process
GO:0008061 F chitin binding
4797 O_BomoMG18089_5prime_partial:A_BomoMG_comp40424_c0_seq2
194bp
GO:0005576 C extracellular region
GO:0006030 P chitin metabolic process
GO:0008061 F chitin binding
4798 O_BomoMG1808_complete:A_BomoMG_comp20823_c0_seq1
368bp
 PREDICTED:_nuclear_speckle_splicing_regulatory_protein_1_[Amyelois_transitella]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006913 P nucleocytoplasmic transport
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0032502 P developmental process
GO:0044822 F RNA binding
4799 O_BomoMG18090_internal:A_BomoMG_comp40425_c0_seq1
360bp
4800 O_BomoMG18091_5prime_partial:A_BomoMG_comp40425_c1_seq1
637bp
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