SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4651 O_BomoMG1780_complete:A_BomoMG_comp20761_c0_seq1
298bp
 PREDICTED:_protein_SDA1_homolog_[Amyelois_transitella]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0030036 P actin cytoskeleton organization
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
4652 O_BomoMG17810_3prime_partial:A_BomoMG_comp40370_c0_seq2
590bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
4653 O_BomoMG17814_5prime_partial:A_BomoMG_comp40371_c0_seq3
313bp
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
4654 O_BomoMG17815_internal:A_BomoMG_comp40371_c0_seq4
251bp
4655 O_BomoMG17816_complete:A_BomoMG_comp40372_c0_seq1
430bp
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006928 P movement of cell or subcellular component
GO:0007010 P cytoskeleton organization
GO:0008093 F cytoskeletal anchor activity
GO:0008154 P actin polymerization or depolymerization
GO:0016032 P viral process
GO:0016477 P cell migration
GO:0016601 P Rac protein signal transduction
GO:0017124 F SH3 domain binding
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019900 F kinase binding
GO:0030027 C lamellipodium
GO:0030175 C filopodium
GO:0031209 C SCAR complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0042995 C cell projection
GO:0048365 F small GTPase binding
GO:0070064 F proline-rich region binding
GO:2000601 P positive regulation of Arp2/3 complex-mediated actin nucleation
4656 O_BomoMG17817_complete:A_BomoMG_comp40374_c0_seq1
227bp
GO:0000151 C ubiquitin ligase complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0010265 P SCF complex assembly
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0017025 F TBP-class protein binding
GO:0030154 P cell differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0043086 P negative regulation of catalytic activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070062 C extracellular exosome
4657 O_BomoMG17818_5prime_partial:A_BomoMG_comp40374_c0_seq2
483bp
GO:0000151 C ubiquitin ligase complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0010265 P SCF complex assembly
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0017025 F TBP-class protein binding
GO:0030154 P cell differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0043086 P negative regulation of catalytic activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0070062 C extracellular exosome
4658 O_BomoMG17819_complete:A_BomoMG_comp40374_c0_seq3
1256bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0010265 P SCF complex assembly
GO:0016567 P protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
4659 O_BomoMG17821_internal:A_BomoMG_comp40375_c0_seq1
121bp
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0009328 C phenylalanine-tRNA ligase complex
GO:0016874 F ligase activity
4660 O_BomoMG17822_3prime_partial:A_BomoMG_comp40375_c0_seq4
417bp
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0009328 C phenylalanine-tRNA ligase complex
GO:0016874 F ligase activity
4661 O_BomoMG17823_5prime_partial:A_BomoMG_comp40375_c1_seq1
174bp
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0009328 C phenylalanine-tRNA ligase complex
GO:0016874 F ligase activity
4662 O_BomoMG17824_5prime_partial:A_BomoMG_comp40375_c1_seq1
134bp
4663 O_BomoMG17826_3prime_partial:A_BomoMG_comp40376_c0_seq1
240bp
GO:0002042 P cell migration involved in sprouting angiogenesis
GO:0003281 P ventricular septum development
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006935 P chemotaxis
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007507 P heart development
GO:0008285 P negative regulation of cell population proliferation
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016199 P axon midline choice point recognition
GO:0021836 P chemorepulsion involved in postnatal olfactory bulb interneuron migration
GO:0021891 P olfactory bulb interneuron development
GO:0030154 P cell differentiation
GO:0030275 F LRR domain binding
GO:0030336 P negative regulation of cell migration
GO:0030424 C axon
GO:0030673 C axolemma
GO:0033600 P negative regulation of mammary gland epithelial cell proliferation
GO:0035025 P positive regulation of Rho protein signal transduction
GO:0035385 P Roundabout signaling pathway
GO:0042802 F identical protein binding
GO:0042995 C cell projection
GO:0050772 P positive regulation of axonogenesis
GO:0050925 P negative regulation of negative chemotaxis
GO:0060763 P mammary duct terminal end bud growth
GO:0060976 P coronary vasculature development
GO:0070100 P negative regulation of chemokine-mediated signaling pathway
4664 O_BomoMG17827_complete:A_BomoMG_comp40376_c0_seq2
222bp
4665 O_BomoMG17828_complete:A_BomoMG_comp40376_c0_seq3
222bp
4666 O_BomoMG17829_complete:A_BomoMG_comp40376_c0_seq4
222bp
4667 O_BomoMG1782_5prime_partial:A_BomoMG_comp20761_c0_seq1
125bp
 PREDICTED:_protein_SDA1_homolog_[Amyelois_transitella]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0022008 P neurogenesis
GO:0030036 P actin cytoskeleton organization
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
4668 O_BomoMG17830_complete:A_BomoMG_comp40376_c0_seq5
222bp
4669 O_BomoMG17831_3prime_partial:A_BomoMG_comp40378_c0_seq1
165bp
GO:0000502 C proteasome complex
GO:0004843 F thiol-dependent deubiquitinase
GO:0004866 F endopeptidase inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007268 P chemical synaptic transmission
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009986 C cell surface
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0045202 C synapse
GO:0050920 P regulation of chemotaxis
GO:0061136 P regulation of proteasomal protein catabolic process
GO:0070062 C extracellular exosome
GO:0070628 F proteasome binding
GO:1903070 P negative regulation of ER-associated ubiquitin-dependent protein catabolic process
4670 O_BomoMG17833_3prime_partial:A_BomoMG_comp40378_c0_seq2
454bp
GO:0000502 C proteasome complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0070628 F proteasome binding
4671 O_BomoMG17837_3prime_partial:A_BomoMG_comp40378_c0_seq3
173bp
GO:0000502 C proteasome complex
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0070628 F proteasome binding
4672 O_BomoMG17838_3prime_partial:A_BomoMG_comp40379_c0_seq1
465bp
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0071001 C U4/U6 snRNP
GO:1903586 P positive regulation of histone deubiquitination
4673 O_BomoMG17839_3prime_partial:A_BomoMG_comp40379_c0_seq2
279bp
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
4674 O_BomoMG1783_complete:A_BomoMG_comp20762_c0_seq1
146bp
 PREDICTED:_probable_NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_12_[Amyelois_transitella]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
4675 O_BomoMG17841_internal:A_BomoMG_comp40379_c0_seq3
373bp
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
4676 O_BomoMG17845_complete:A_BomoMG_comp40380_c0_seq2
1016bp
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010501 P RNA secondary structure unwinding
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
4677 O_BomoMG17849_complete:A_BomoMG_comp40381_c0_seq1
130bp
4678 O_BomoMG1784_internal:A_BomoMG_comp20771_c0_seq1
125bp
 PREDICTED:_protein_pigeon_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4679 O_BomoMG17850_complete:A_BomoMG_comp40381_c0_seq3
328bp
4680 O_BomoMG17852_complete:A_BomoMG_comp40382_c0_seq1
361bp
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0001934 P positive regulation of protein phosphorylation
GO:0003007 P heart morphogenesis
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004707 F MAP kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006468 P protein phosphorylation
GO:0006952 P defense response
GO:0006955 P immune response
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007623 P circadian rhythm
GO:0008340 P determination of adult lifespan
GO:0009408 P response to heat
GO:0009617 P response to bacterium
GO:0009651 P response to salt stress
GO:0010906 P regulation of glucose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016909 F MAP kinase activity
GO:0030510 P regulation of BMP signaling pathway
GO:0034614 P cellular response to reactive oxygen species
GO:0038001 P paracrine signaling
GO:0040018 P positive regulation of multicellular organism growth
GO:0042542 P response to hydrogen peroxide
GO:0042594 P response to starvation
GO:0042742 P defense response to bacterium
GO:0045088 P regulation of innate immune response
GO:0045793 P positive regulation of cell size
GO:0048082 P regulation of adult chitin-containing cuticle pigmentation
GO:0050832 P defense response to fungus
GO:0071243 P cellular response to arsenic-containing substance
GO:0071276 P cellular response to cadmium ion
GO:0072593 P reactive oxygen species metabolic process
GO:1900407 P regulation of cellular response to oxidative stress
GO:2000331 P regulation of terminal button organization
previous next from show/16985

- SilkBase 1999-2023 -