SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4501 O_BomoMG17536_complete:A_BomoMG_comp40322_c0_seq2
807bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001822 P kidney development
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006807 P nitrogen compound metabolic process
GO:0008584 P male gonad development
GO:0008585 P female gonad development
GO:0009791 P post-embryonic development
GO:0010761 P fibroblast migration
GO:0030325 P adrenal gland development
GO:0035264 P multicellular organism growth
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048468 P cell development
GO:0048644 P muscle organ morphogenesis
GO:0048705 P skeletal system morphogenesis
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060021 P roof of mouth development
GO:0060325 P face morphogenesis
GO:0060612 P adipose tissue development
GO:0060613 P fat pad development
4502 O_BomoMG17538_complete:A_BomoMG_comp40323_c0_seq3
496bp
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007166 P cell surface receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007292 P female gamete generation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007548 P sex differentiation
GO:0008286 P insulin receptor signaling pathway
GO:0010906 P regulation of glucose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030154 P cell differentiation
GO:0030307 P positive regulation of cell growth
GO:0031594 C neuromuscular junction
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0043066 P negative regulation of apoptotic process
GO:0045471 P response to ethanol
GO:0045793 P positive regulation of cell size
GO:0046620 P regulation of organ growth
GO:0051124 P synaptic assembly at neuromuscular junction
4503 O_BomoMG17539_complete:A_BomoMG_comp40323_c0_seq4
566bp
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007166 P cell surface receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007292 P female gamete generation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007548 P sex differentiation
GO:0008286 P insulin receptor signaling pathway
GO:0010906 P regulation of glucose metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030154 P cell differentiation
GO:0030307 P positive regulation of cell growth
GO:0031594 C neuromuscular junction
GO:0035556 P intracellular signal transduction
GO:0040008 P regulation of growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0043066 P negative regulation of apoptotic process
GO:0045471 P response to ethanol
GO:0045793 P positive regulation of cell size
GO:0046620 P regulation of organ growth
GO:0051124 P synaptic assembly at neuromuscular junction
4504 O_BomoMG1753_internal:A_BomoMG_comp20723_c0_seq1
231bp
 PREDICTED:_rho_GTPase-activating_protein_6_[Bombyx_mori]
4505 O_BomoMG17540_complete:A_BomoMG_comp40324_c0_seq1
404bp
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0000793 C condensed chromosome
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0040018 P positive regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071481 P cellular response to X-ray
4506 O_BomoMG17541_5prime_partial:A_BomoMG_comp40324_c0_seq2
230bp
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0000793 C condensed chromosome
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0040018 P positive regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071481 P cellular response to X-ray
4507 O_BomoMG17542_3prime_partial:A_BomoMG_comp40325_c0_seq1
469bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008023 C transcription elongation factor complex
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0070449 C elongin complex
4508 O_BomoMG17545_complete:A_BomoMG_comp40325_c0_seq2
695bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008023 C transcription elongation factor complex
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0070449 C elongin complex
4509 O_BomoMG17548_5prime_partial:A_BomoMG_comp40326_c0_seq1
693bp
GO:0000139 C Golgi membrane
GO:0000209 P protein polyubiquitination
GO:0000775 C chromosome, centromeric region
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000922 C spindle pole
GO:0003950 F NAD+ ADP-ribosyltransferase activity
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006471 P protein ADP-ribosylation
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051973 P positive regulation of telomerase activity
GO:0070198 P protein localization to chromosome, telomeric region
GO:0070212 P protein poly-ADP-ribosylation
GO:0070213 P protein auto-ADP-ribosylation
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1904355 P positive regulation of telomere capping
GO:1904357 P negative regulation of telomere maintenance via telomere lengthening
GO:1904743 P negative regulation of telomeric DNA binding
GO:1904908 P negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric
4510 O_BomoMG1754_internal:A_BomoMG_comp20724_c0_seq1
371bp
 PREDICTED:_rotatin-like_isoform_X2_[Bombyx_mori]
4511 O_BomoMG17552_3prime_partial:A_BomoMG_comp40326_c0_seq2
471bp
GO:0003950 F NAD+ ADP-ribosyltransferase activity
GO:0005515 F protein binding
GO:0006471 P protein ADP-ribosylation
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0022416 P chaeta development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
GO:0090364 P regulation of proteasome assembly
GO:0097110 F scaffold protein binding
4512 O_BomoMG17553_internal:A_BomoMG_comp40326_c0_seq3
587bp
GO:0003950 F NAD+ ADP-ribosyltransferase activity
GO:0005515 F protein binding
GO:0006471 P protein ADP-ribosylation
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0022416 P chaeta development
GO:0035220 P wing disc development
GO:0046872 F metal ion binding
GO:0090364 P regulation of proteasome assembly
GO:0097110 F scaffold protein binding
4513 O_BomoMG17558_5prime_partial:A_BomoMG_comp40327_c0_seq1
173bp
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
4514 O_BomoMG17559_3prime_partial:A_BomoMG_comp40327_c1_seq1
302bp
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
4515 O_BomoMG17561_3prime_partial:A_BomoMG_comp40327_c1_seq2
229bp
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0017160 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
GO:0046578 P regulation of Ras protein signal transduction
4516 O_BomoMG17562_internal:A_BomoMG_comp40328_c1_seq1
666bp
4517 O_BomoMG17565_3prime_partial:A_BomoMG_comp40328_c1_seq2
390bp
4518 O_BomoMG17568_3prime_partial:A_BomoMG_comp40328_c1_seq3
390bp
4519 O_BomoMG1756_internal:A_BomoMG_comp20728_c0_seq1
272bp
 PREDICTED:_uncharacterized_protein_LOC101736037_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006979 P response to oxidative stress
GO:0035035 F histone acetyltransferase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
4520 O_BomoMG17570_internal:A_BomoMG_comp40328_c1_seq4
667bp
4521 O_BomoMG17573_5prime_partial:A_BomoMG_comp40329_c0_seq1
164bp
4522 O_BomoMG17574_complete:A_BomoMG_comp40329_c0_seq3
821bp
GO:0005737 C cytoplasm
4523 O_BomoMG17575_internal:A_BomoMG_comp40330_c0_seq1
180bp
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
4524 O_BomoMG17578_internal:A_BomoMG_comp40330_c0_seq2
499bp
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
4525 O_BomoMG1757_internal:A_BomoMG_comp20736_c0_seq1
201bp
 hypothetical_protein_RR48_01266_[Papilio_machaon]
4526 O_BomoMG17580_5prime_partial:A_BomoMG_comp40330_c0_seq3
115bp
GO:0003677 F DNA binding
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045892 P negative regulation of transcription, DNA-templated
4527 O_BomoMG17581_complete:A_BomoMG_comp40331_c1_seq1
625bp
GO:0000139 C Golgi membrane
GO:0004653 F polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0006486 P protein glycosylation
GO:0009312 P oligosaccharide biosynthetic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
4528 O_BomoMG17582_5prime_partial:A_BomoMG_comp40332_c0_seq1
1695bp
GO:0000502 C proteasome complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0032947 F molecular adaptor activity
GO:0043248 P proteasome assembly
4529 O_BomoMG17585_5prime_partial:A_BomoMG_comp40332_c0_seq2
118bp
4530 O_BomoMG17586_3prime_partial:A_BomoMG_comp40332_c1_seq1
201bp
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005771 C multivesicular body
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030139 C endocytic vesicle
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0031410 C cytoplasmic vesicle
GO:0032947 F molecular adaptor activity
GO:0043248 P proteasome assembly
previous next from show/16985

- SilkBase 1999-2023 -