SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3691 O_BomoMG16062_internal:A_BomoMG_comp40082_c1_seq1
242bp
3692 O_BomoMG16064_internal:A_BomoMG_comp40082_c1_seq2
203bp
3693 O_BomoMG16066_complete:A_BomoMG_comp40083_c0_seq1
214bp
GO:0005739 C mitochondrion
3694 O_BomoMG16067_complete:A_BomoMG_comp40083_c0_seq2
214bp
GO:0005739 C mitochondrion
3695 O_BomoMG1606_complete:A_BomoMG_comp20504_c0_seq1
136bp
 PREDICTED:_zinc_finger_CCHC_domain-containing_protein_10_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3696 O_BomoMG16070_complete:A_BomoMG_comp40084_c0_seq4
321bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
3697 O_BomoMG16071_3prime_partial:A_BomoMG_comp40084_c0_seq5
109bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
3698 O_BomoMG16072_complete:A_BomoMG_comp40084_c0_seq6
343bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0008266 F poly(U) RNA binding
GO:0048864 P stem cell development
3699 O_BomoMG16076_complete:A_BomoMG_comp40085_c0_seq3
284bp
3700 O_BomoMG16078_3prime_partial:A_BomoMG_comp40086_c0_seq1
123bp
3701 O_BomoMG16079_internal:A_BomoMG_comp40086_c0_seq2
392bp
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3702 O_BomoMG1607_complete:A_BomoMG_comp20509_c0_seq1
471bp
 PREDICTED:_nitrilase_homolog_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006807 P nitrogen compound metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0047710 F bis(5'-adenosyl)-triphosphatase activity
3703 O_BomoMG16082_complete:A_BomoMG_comp40087_c0_seq1
143bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0008150 P biological_process
GO:0046527 F glucosyltransferase activity
3704 O_BomoMG16085_complete:A_BomoMG_comp40087_c0_seq2
330bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
3705 O_BomoMG16088_complete:A_BomoMG_comp40087_c0_seq4
143bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0008150 P biological_process
GO:0046527 F glucosyltransferase activity
3706 O_BomoMG16093_complete:A_BomoMG_comp40088_c0_seq1
908bp
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
3707 O_BomoMG16095_complete:A_BomoMG_comp40088_c0_seq2
790bp
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
3708 O_BomoMG16097_5prime_partial:A_BomoMG_comp40088_c0_seq3
157bp
3709 O_BomoMG16098_complete:A_BomoMG_comp40088_c0_seq4
853bp
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
3710 O_BomoMG1609_complete:A_BomoMG_comp20516_c0_seq1
347bp
 inhibitor_of_apoptosis_protein_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3711 O_BomoMG16100_complete:A_BomoMG_comp40089_c0_seq2
600bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0008150 P biological_process
3712 O_BomoMG16102_5prime_partial:A_BomoMG_comp40090_c0_seq1
501bp
GO:0000387 P spliceosomal snRNP assembly
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016604 C nuclear body
GO:0017069 F snRNA binding
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
3713 O_BomoMG16104_5prime_partial:A_BomoMG_comp40090_c0_seq2
784bp
GO:0000387 P spliceosomal snRNP assembly
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016604 C nuclear body
GO:0017069 F snRNA binding
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
3714 O_BomoMG16106_internal:A_BomoMG_comp40090_c1_seq1
162bp
3715 O_BomoMG16108_3prime_partial:A_BomoMG_comp40091_c0_seq2
156bp
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001558 P regulation of cell growth
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
3716 O_BomoMG16109_complete:A_BomoMG_comp40092_c0_seq2
1095bp
GO:0001054 F RNA polymerase I activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0008270 F zinc ion binding
GO:0009303 P rRNA transcription
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
3717 O_BomoMG1610_complete:A_BomoMG_comp20516_c0_seq2
362bp
 PREDICTED:_inhibitor_of_apoptosis_protein_isoform_X1_[Bombyx_mori]
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3718 O_BomoMG16111_internal:A_BomoMG_comp40092_c1_seq1
342bp
GO:0001054 F RNA polymerase I activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0008270 F zinc ion binding
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
3719 O_BomoMG16112_complete:A_BomoMG_comp40093_c0_seq1
209bp
3720 O_BomoMG16114_internal:A_BomoMG_comp40094_c0_seq1
890bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000183 P rDNA heterochromatin assembly
GO:0000776 C kinetochore
GO:0000785 C chromatin
GO:0000976 F transcription cis-regulatory region binding
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001106 F transcription corepressor activity
GO:0001701 P in utero embryonic development
GO:0002218 P activation of innate immune response
GO:0002230 P positive regulation of defense response to virus by host
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0007568 P aging
GO:0008134 F transcription factor binding
GO:0010243 P response to organonitrogen compound
GO:0010817 P regulation of hormone levels
GO:0010971 P positive regulation of G2/M transition of mitotic cell cycle
GO:0016575 P histone deacetylation
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0032403 F protein-containing complex binding
GO:0033558 F protein deacetylase activity
GO:0034613 P cellular protein localization
GO:0042754 P negative regulation of circadian rhythm
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045171 C intercellular bridge
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048511 P rhythmic process
GO:0051595 P response to methylglyoxal
GO:0071333 P cellular response to glucose stimulus
GO:1900181 P negative regulation of protein localization to nucleus
GO:1901675 P negative regulation of histone H3-K27 acetylation
GO:1903351 P cellular response to dopamine
GO:2000678 P negative regulation of transcription regulatory region DNA binding
previous next from show/16985

- SilkBase 1999-2023 -