SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3091 O_BomoMG15015_3prime_partial:A_BomoMG_comp39866_c0_seq8
168bp
3092 O_BomoMG15018_complete:A_BomoMG_comp39867_c0_seq1
510bp
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:0055085 P transmembrane transport
3093 O_BomoMG15019_complete:A_BomoMG_comp39867_c0_seq3
510bp
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:0055085 P transmembrane transport
3094 O_BomoMG1501_complete:A_BomoMG_comp20322_c0_seq1
1712bp
 PREDICTED:_brefeldin_A-inhibited_guanine_nucleotide-exchange_protein_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0010256 P endomembrane system organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016363 C nuclear matrix
GO:0017022 F myosin binding
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030837 P negative regulation of actin filament polymerization
GO:0031175 P neuron projection development
GO:0032012 P regulation of ARF protein signal transduction
GO:0034237 F protein kinase A regulatory subunit binding
GO:0034260 P negative regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051897 P positive regulation of protein kinase B signaling
GO:0090284 P positive regulation of protein glycosylation in Golgi
GO:0090303 P positive regulation of wound healing
GO:2000114 P regulation of establishment of cell polarity
3095 O_BomoMG15020_complete:A_BomoMG_comp39868_c0_seq1
447bp
3096 O_BomoMG15022_complete:A_BomoMG_comp39868_c0_seq2
447bp
3097 O_BomoMG15023_complete:A_BomoMG_comp39868_c0_seq3
441bp
3098 O_BomoMG15024_complete:A_BomoMG_comp39868_c0_seq4
441bp
3099 O_BomoMG15026_3prime_partial:A_BomoMG_comp39869_c0_seq1
474bp
GO:0004185 F serine-type carboxypeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008239 F dipeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0045087 P innate immune response
3100 O_BomoMG15027_complete:A_BomoMG_comp39869_c0_seq2
497bp
GO:0004185 F serine-type carboxypeptidase activity
GO:0005575 C cellular_component
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0008239 F dipeptidyl-peptidase activity
GO:0016787 F hydrolase activity
GO:0045087 P innate immune response
3101 O_BomoMG15029_5prime_partial:A_BomoMG_comp39870_c1_seq1
437bp
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3102 O_BomoMG1502_complete:A_BomoMG_comp20322_c0_seq1
375bp
 suppressor_of_profilin_2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005885 C Arp2/3 protein complex
GO:0015629 C actin cytoskeleton
GO:0030833 P regulation of actin filament polymerization
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0036195 C muscle cell projection membrane
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
3103 O_BomoMG15030_internal:A_BomoMG_comp39871_c0_seq1
488bp
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0009416 P response to light stimulus
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019898 C extrinsic component of membrane
GO:0019905 F syntaxin binding
GO:0030707 P ovarian follicle cell development
GO:0032940 P secretion by cell
GO:0043195 C terminal bouton
GO:0048489 P synaptic vesicle transport
3104 O_BomoMG15032_5prime_partial:A_BomoMG_comp39871_c0_seq2
598bp
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0009416 P response to light stimulus
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019898 C extrinsic component of membrane
GO:0019905 F syntaxin binding
GO:0030707 P ovarian follicle cell development
GO:0032940 P secretion by cell
GO:0043195 C terminal bouton
GO:0048489 P synaptic vesicle transport
3105 O_BomoMG15034_internal:A_BomoMG_comp39873_c0_seq1
702bp
GO:0000166 F nucleotide binding
GO:0002692 P negative regulation of cellular extravasation
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007420 P brain development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030336 P negative regulation of cell migration
GO:0032496 P response to lipopolysaccharide
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042472 P inner ear morphogenesis
GO:0043114 P regulation of vascular permeability
GO:0043234 C protein-containing complex
GO:0043314 P negative regulation of neutrophil degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046777 P protein autophosphorylation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0050728 P negative regulation of inflammatory response
GO:0050766 P positive regulation of phagocytosis
GO:0050885 P neuromuscular process controlling balance
GO:0051726 P regulation of cell cycle
GO:0060313 P negative regulation of blood vessel remodeling
GO:0070062 C extracellular exosome
3106 O_BomoMG15037_complete:A_BomoMG_comp39873_c0_seq2
520bp
GO:0000166 F nucleotide binding
GO:0002692 P negative regulation of cellular extravasation
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007420 P brain development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030336 P negative regulation of cell migration
GO:0032496 P response to lipopolysaccharide
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042472 P inner ear morphogenesis
GO:0043114 P regulation of vascular permeability
GO:0043234 C protein-containing complex
GO:0043314 P negative regulation of neutrophil degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046777 P protein autophosphorylation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0050728 P negative regulation of inflammatory response
GO:0050766 P positive regulation of phagocytosis
GO:0050885 P neuromuscular process controlling balance
GO:0051726 P regulation of cell cycle
GO:0060313 P negative regulation of blood vessel remodeling
GO:0070062 C extracellular exosome
3107 O_BomoMG15040_5prime_partial:A_BomoMG_comp39873_c0_seq3
576bp
GO:0000166 F nucleotide binding
GO:0002692 P negative regulation of cellular extravasation
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007420 P brain development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030336 P negative regulation of cell migration
GO:0032496 P response to lipopolysaccharide
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042472 P inner ear morphogenesis
GO:0043114 P regulation of vascular permeability
GO:0043234 C protein-containing complex
GO:0043314 P negative regulation of neutrophil degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046777 P protein autophosphorylation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0050728 P negative regulation of inflammatory response
GO:0050766 P positive regulation of phagocytosis
GO:0050885 P neuromuscular process controlling balance
GO:0051726 P regulation of cell cycle
GO:0060313 P negative regulation of blood vessel remodeling
GO:0070062 C extracellular exosome
3108 O_BomoMG15043_3prime_partial:A_BomoMG_comp39873_c0_seq4
520bp
3109 O_BomoMG15045_3prime_partial:A_BomoMG_comp39873_c0_seq5
646bp
GO:0000166 F nucleotide binding
GO:0002692 P negative regulation of cellular extravasation
GO:0004674 F protein serine/threonine kinase activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007420 P brain development
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030336 P negative regulation of cell migration
GO:0032496 P response to lipopolysaccharide
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0042472 P inner ear morphogenesis
GO:0043114 P regulation of vascular permeability
GO:0043234 C protein-containing complex
GO:0043314 P negative regulation of neutrophil degranulation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046777 P protein autophosphorylation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0050728 P negative regulation of inflammatory response
GO:0050766 P positive regulation of phagocytosis
GO:0050885 P neuromuscular process controlling balance
GO:0051726 P regulation of cell cycle
GO:0060313 P negative regulation of blood vessel remodeling
GO:0070062 C extracellular exosome
3110 O_BomoMG15048_3prime_partial:A_BomoMG_comp39874_c2_seq2
112bp
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007034 P vacuolar transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031902 C late endosome membrane
3111 O_BomoMG15049_complete:A_BomoMG_comp39875_c0_seq1
1728bp
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
3112 O_BomoMG1504_5prime_partial:A_BomoMG_comp20324_c0_seq1
183bp
 NADH_dehydrogenase_isoform_2_[Bombyx_mori]
GO:0000036 F acyl carrier activity
GO:0005739 C mitochondrion
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0031177 F phosphopantetheine binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
3113 O_BomoMG15053_internal:A_BomoMG_comp39876_c0_seq1
386bp
3114 O_BomoMG15054_complete:A_BomoMG_comp39878_c0_seq1
201bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0042273 P ribosomal large subunit biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
3115 O_BomoMG15055_complete:A_BomoMG_comp39878_c0_seq2
235bp
GO:0003351 P epithelial cilium movement involved in extracellular fluid movement
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0007283 P spermatogenesis
GO:0007368 P determination of left/right symmetry
GO:0021591 P ventricular system development
GO:0021670 P lateral ventricle development
GO:0021678 P third ventricle development
GO:0030317 P flagellated sperm motility
GO:0060972 P left/right pattern formation
3116 O_BomoMG15056_complete:A_BomoMG_comp39878_c0_seq2
201bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0042273 P ribosomal large subunit biogenesis
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
3117 O_BomoMG15057_internal:A_BomoMG_comp39879_c0_seq1
335bp
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005798 C Golgi-associated vesicle
GO:0005829 C cytosol
GO:0006726 P eye pigment biosynthetic process
GO:0006727 P ommochrome biosynthetic process
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006895 P Golgi to endosome transport
GO:0006897 P endocytosis
GO:0007040 P lysosome organization
GO:0007041 P lysosomal transport
GO:0007220 P Notch receptor processing
GO:0008055 P ocellus pigment biosynthetic process
GO:0008057 P eye pigment granule organization
GO:0008340 P determination of adult lifespan
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030123 C AP-3 adaptor complex
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046907 P intracellular transport
GO:0048072 P compound eye pigmentation
GO:0060967 P negative regulation of gene silencing by RNA
3118 O_BomoMG15059_5prime_partial:A_BomoMG_comp39879_c0_seq2
532bp
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005798 C Golgi-associated vesicle
GO:0005829 C cytosol
GO:0006726 P eye pigment biosynthetic process
GO:0006727 P ommochrome biosynthetic process
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006887 P exocytosis
GO:0006895 P Golgi to endosome transport
GO:0006897 P endocytosis
GO:0007040 P lysosome organization
GO:0007041 P lysosomal transport
GO:0007220 P Notch receptor processing
GO:0008055 P ocellus pigment biosynthetic process
GO:0008057 P eye pigment granule organization
GO:0008340 P determination of adult lifespan
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030123 C AP-3 adaptor complex
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046907 P intracellular transport
GO:0048072 P compound eye pigmentation
GO:0060967 P negative regulation of gene silencing by RNA
3119 O_BomoMG1505_5prime_partial:A_BomoMG_comp20324_c0_seq2
183bp
 NADH_dehydrogenase_isoform_1_[Bombyx_mori]
GO:0000036 F acyl carrier activity
GO:0005739 C mitochondrion
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0010906 P regulation of glucose metabolic process
GO:0019233 P sensory perception of pain
GO:0031177 F phosphopantetheine binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
3120 O_BomoMG15063_5prime_partial:A_BomoMG_comp39880_c0_seq2
397bp
GO:0000242 C pericentriolar material
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007067 P mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0030054 C cell junction
GO:0030707 P ovarian follicle cell development
GO:0035329 P hippo signaling
GO:0045177 C apical part of cell
GO:0045179 C apical cortex
GO:0045572 P positive regulation of imaginal disc growth
GO:0046622 P positive regulation of organ growth
GO:0046872 F metal ion binding
GO:0071539 P protein localization to centrosome
previous next from show/16985

- SilkBase 1999-2023 -