SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2941 O_BomoMG14724_internal:A_BomoMG_comp39793_c1_seq2
286bp
GO:0001786 F phosphatidylserine binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0010324 P membrane invagination
GO:0016020 C membrane
GO:0035091 F phosphatidylinositol binding
GO:0043009 P chordate embryonic development
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
2942 O_BomoMG14725_5prime_partial:A_BomoMG_comp39793_c2_seq1
173bp
GO:0001786 F phosphatidylserine binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0006897 P endocytosis
GO:0010324 P membrane invagination
GO:0016020 C membrane
GO:0035091 F phosphatidylinositol binding
GO:0043009 P chordate embryonic development
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0072659 P protein localization to plasma membrane
2943 O_BomoMG14726_internal:A_BomoMG_comp39794_c1_seq1
619bp
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007528 P neuromuscular junction development
GO:0008092 F cytoskeletal protein binding
GO:0008093 F cytoskeletal anchor activity
GO:0009986 C cell surface
GO:0010628 P positive regulation of gene expression
GO:0010650 P positive regulation of cell communication by electrical coupling
GO:0010765 P positive regulation of sodium ion transport
GO:0010960 P magnesium ion homeostasis
GO:0014704 C intercalated disc
GO:0014731 C spectrin-associated cytoskeleton
GO:0016020 C membrane
GO:0016529 C sarcoplasmic reticulum
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0031594 C neuromuscular junction
GO:0033268 C node of Ranvier
GO:0034112 P positive regulation of homotypic cell-cell adhesion
GO:0042383 C sarcolemma
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043034 C costamere
GO:0043194 C axon initial segment
GO:0043266 P regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045296 F cadherin binding
GO:0045838 P positive regulation of membrane potential
GO:0071286 P cellular response to magnesium ion
GO:0071709 P membrane assembly
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0090314 P positive regulation of protein targeting to membrane
GO:1900827 P positive regulation of membrane depolarization during cardiac muscle cell action potential
GO:1902260 P negative regulation of delayed rectifier potassium channel activity
GO:2000651 P positive regulation of sodium ion transmembrane transporter activity
GO:2001259 P positive regulation of cation channel activity
2944 O_BomoMG14730_3prime_partial:A_BomoMG_comp39794_c1_seq2
281bp
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007528 P neuromuscular junction development
GO:0008092 F cytoskeletal protein binding
GO:0008093 F cytoskeletal anchor activity
GO:0009986 C cell surface
GO:0010628 P positive regulation of gene expression
GO:0010650 P positive regulation of cell communication by electrical coupling
GO:0010765 P positive regulation of sodium ion transport
GO:0010960 P magnesium ion homeostasis
GO:0014704 C intercalated disc
GO:0014731 C spectrin-associated cytoskeleton
GO:0016020 C membrane
GO:0016529 C sarcoplasmic reticulum
GO:0030018 C Z disc
GO:0030054 C cell junction
GO:0030315 C T-tubule
GO:0030424 C axon
GO:0030425 C dendrite
GO:0030507 F spectrin binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0031594 C neuromuscular junction
GO:0033268 C node of Ranvier
GO:0034112 P positive regulation of homotypic cell-cell adhesion
GO:0042383 C sarcolemma
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043034 C costamere
GO:0043194 C axon initial segment
GO:0043266 P regulation of potassium ion transport
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045296 F cadherin binding
GO:0045838 P positive regulation of membrane potential
GO:0071286 P cellular response to magnesium ion
GO:0071709 P membrane assembly
GO:0072659 P protein localization to plasma membrane
GO:0072661 P protein localization to plasma membrane
GO:0090314 P positive regulation of protein targeting to membrane
GO:1900827 P positive regulation of membrane depolarization during cardiac muscle cell action potential
GO:1902260 P negative regulation of delayed rectifier potassium channel activity
GO:2000651 P positive regulation of sodium ion transmembrane transporter activity
GO:2001259 P positive regulation of cation channel activity
2945 O_BomoMG14733_complete:A_BomoMG_comp39795_c0_seq1
302bp
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
2946 O_BomoMG14734_complete:A_BomoMG_comp39795_c0_seq2
268bp
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
2947 O_BomoMG14735_complete:A_BomoMG_comp39795_c0_seq3
614bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
2948 O_BomoMG14736_3prime_partial:A_BomoMG_comp39796_c0_seq1
430bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2949 O_BomoMG14737_3prime_partial:A_BomoMG_comp39796_c0_seq2
430bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
2950 O_BomoMG14738_complete:A_BomoMG_comp39797_c0_seq2
618bp
GO:0000070 P mitotic sister chromatid segregation
GO:0000132 P establishment of mitotic spindle orientation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005819 C spindle
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007096 P regulation of exit from mitosis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0034501 P protein localization to kinetochore
GO:0051301 P cell division
GO:0070939 C Dsl1/NZR complex
GO:1990423 C RZZ complex
2951 O_BomoMG14739_complete:A_BomoMG_comp39797_c0_seq4
731bp
GO:0000070 P mitotic sister chromatid segregation
GO:0000132 P establishment of mitotic spindle orientation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000922 C spindle pole
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005819 C spindle
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0006461 P protein-containing complex assembly
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007080 P mitotic metaphase plate congression
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007096 P regulation of exit from mitosis
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0034501 P protein localization to kinetochore
GO:0051301 P cell division
GO:0070939 C Dsl1/NZR complex
GO:1990423 C RZZ complex
2952 O_BomoMG1473_complete:A_BomoMG_comp20294_c0_seq1
210bp
 ferritin_precursor_[Bombyx_mori]
GO:0004322 F ferroxidase activity
GO:0005576 C extracellular region
GO:0005623 C obsolete cell
GO:0006826 P iron ion transport
GO:0006879 P cellular iron ion homeostasis
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
2953 O_BomoMG14740_3prime_partial:A_BomoMG_comp39798_c0_seq1
979bp
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
2954 O_BomoMG14743_3prime_partial:A_BomoMG_comp39798_c0_seq2
975bp
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005112 F Notch binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016604 C nuclear body
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0042826 F histone deacetylase binding
GO:0044255 P cellular lipid metabolic process
GO:0047485 F protein N-terminus binding
GO:0072365 P obsolete regulation of cellular ketone metabolic process by negative regulation of transcription from RNA polymerase II promoter
GO:1903799 P negative regulation of production of miRNAs involved in gene silencing by miRNA
2955 O_BomoMG14747_5prime_partial:A_BomoMG_comp39799_c0_seq2
591bp
2956 O_BomoMG14748_3prime_partial:A_BomoMG_comp39800_c0_seq1
335bp
GO:0005634 C nucleus
GO:0046872 F metal ion binding
2957 O_BomoMG14749_internal:A_BomoMG_comp39800_c0_seq2
170bp
GO:0005634 C nucleus
GO:0046872 F metal ion binding
2958 O_BomoMG1474_3prime_partial:A_BomoMG_comp20297_c0_seq1
110bp
 ribosomal_protein_P1_[Bombyx_mori]
GO:0002181 P cytoplasmic translation
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006414 P translational elongation
GO:0022625 C cytosolic large ribosomal subunit
GO:0030295 F protein kinase activator activity
GO:0030529 C ribonucleoprotein complex
GO:0030687 C preribosome, large subunit precursor
GO:0032147 P activation of protein kinase activity
GO:0045860 P positive regulation of protein kinase activity
GO:0070180 F large ribosomal subunit rRNA binding
2959 O_BomoMG14750_internal:A_BomoMG_comp39800_c0_seq3
161bp
GO:0005634 C nucleus
GO:0046872 F metal ion binding
2960 O_BomoMG14751_internal:A_BomoMG_comp39801_c0_seq1
296bp
2961 O_BomoMG14752_3prime_partial:A_BomoMG_comp39802_c0_seq1
930bp
GO:0003146 P heart jogging
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0006412 P translation
GO:0007049 P cell cycle
GO:0007064 P mitotic sister chromatid cohesion
GO:0007417 P central nervous system development
GO:0007507 P heart development
GO:0009303 P rRNA transcription
GO:0010468 P regulation of gene expression
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0048565 P digestive tract development
GO:0048703 P embryonic viscerocranium morphogenesis
GO:0060828 P regulation of canonical Wnt signaling pathway
GO:0071733 P obsolete transcriptional activation by promoter-enhancer looping
2962 O_BomoMG14758_5prime_partial:A_BomoMG_comp39802_c0_seq2
1087bp
2963 O_BomoMG14761_5prime_partial:A_BomoMG_comp39802_c0_seq3
1124bp
2964 O_BomoMG14764_complete:A_BomoMG_comp39803_c0_seq1
656bp
GO:0004095 F carnitine O-palmitoyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
2965 O_BomoMG14765_complete:A_BomoMG_comp39804_c0_seq1
402bp
2966 O_BomoMG14767_complete:A_BomoMG_comp39804_c0_seq2
397bp
2967 O_BomoMG14769_complete:A_BomoMG_comp39804_c0_seq3
369bp
2968 O_BomoMG14771_complete:A_BomoMG_comp39804_c0_seq5
360bp
2969 O_BomoMG14773_complete:A_BomoMG_comp39804_c0_seq6
364bp
2970 O_BomoMG14775_complete:A_BomoMG_comp39804_c0_seq7
355bp
previous next from show/16985

- SilkBase 1999-2023 -