SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2881 O_BomoMG14637_complete:A_BomoMG_comp39768_c0_seq3
115bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
2882 O_BomoMG14638_complete:A_BomoMG_comp39768_c0_seq4
1393bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
2883 O_BomoMG14641_complete:A_BomoMG_comp39768_c0_seq5
115bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
2884 O_BomoMG14642_complete:A_BomoMG_comp39768_c0_seq6
1324bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016887 F ATP hydrolysis activity
2885 O_BomoMG14645_5prime_partial:A_BomoMG_comp39769_c0_seq1
256bp
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
2886 O_BomoMG14647_internal:A_BomoMG_comp39770_c0_seq2
181bp
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
2887 O_BomoMG14649_3prime_partial:A_BomoMG_comp39772_c0_seq2
860bp
GO:0000151 C ubiquitin ligase complex
GO:0003730 F mRNA 3'-UTR binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007346 P regulation of mitotic cell cycle
GO:0008270 F zinc ion binding
GO:0010390 P histone monoubiquitination
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0017075 F syntaxin-1 binding
GO:0019898 C extrinsic component of membrane
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032403 F protein-containing complex binding
GO:0033503 C HULC complex
GO:0033523 P histone H2B ubiquitination
GO:0042803 F protein homodimerization activity
GO:0043005 C neuron projection
GO:0043234 C protein-containing complex
GO:0043434 P response to peptide hormone
GO:0043679 C axon terminus
GO:0046872 F metal ion binding
GO:1900364 P negative regulation of mRNA polyadenylation
GO:1901800 P positive regulation of proteasomal protein catabolic process
GO:1902916 P positive regulation of protein polyubiquitination
GO:2001168 P positive regulation of histone H2B ubiquitination
2888 O_BomoMG1464_complete:A_BomoMG_comp20287_c0_seq1
877bp
 PREDICTED:_eukaryotic_translation_initiation_factor_3_subunit_C_isoform_X1_[Bombyx_mori]
GO:0001731 P formation of translation preinitiation complex
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005737 C cytoplasm
GO:0005852 C eukaryotic translation initiation factor 3 complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0006446 P regulation of translational initiation
GO:0016282 C eukaryotic 43S preinitiation complex
GO:0031369 F translation initiation factor binding
GO:0033290 C eukaryotic 48S preinitiation complex
2889 O_BomoMG14653_3prime_partial:A_BomoMG_comp39772_c0_seq3
209bp
GO:0000790 C chromatin
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006513 P protein monoubiquitination
GO:0006909 P phagocytosis
GO:0007219 P Notch signaling pathway
GO:0007422 P peripheral nervous system development
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016570 P histone modification
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
2890 O_BomoMG14655_complete:A_BomoMG_comp39773_c0_seq1
445bp
GO:0003824 F catalytic activity
GO:0004586 F ornithine decarboxylase activity
GO:0006596 P polyamine biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0033387 P putrescine biosynthetic process from ornithine
2891 O_BomoMG14658_complete:A_BomoMG_comp39773_c0_seq2
127bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044267 P cellular protein metabolic process
GO:0044822 F RNA binding
2892 O_BomoMG14659_complete:A_BomoMG_comp39773_c0_seq3
445bp
GO:0003824 F catalytic activity
GO:0004586 F ornithine decarboxylase activity
GO:0006596 P polyamine biosynthetic process
GO:0016829 F lyase activity
GO:0016831 F carboxy-lyase activity
GO:0033387 P putrescine biosynthetic process from ornithine
2893 O_BomoMG14661_complete:A_BomoMG_comp39774_c0_seq1
372bp
GO:0003735 F structural constituent of ribosome
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005761 C mitochondrial ribosome
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006915 P apoptotic process
GO:0015935 C small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070125 P mitochondrial translational elongation
GO:0070126 P mitochondrial translational termination
GO:0097190 P apoptotic signaling pathway
2894 O_BomoMG14662_complete:A_BomoMG_comp39775_c1_seq1
214bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2895 O_BomoMG14663_complete:A_BomoMG_comp39775_c1_seq4
214bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2896 O_BomoMG14664_complete:A_BomoMG_comp39775_c1_seq5
214bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2897 O_BomoMG14665_complete:A_BomoMG_comp39775_c1_seq6
204bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2898 O_BomoMG14666_complete:A_BomoMG_comp39775_c1_seq7
214bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2899 O_BomoMG14667_complete:A_BomoMG_comp39775_c1_seq8
204bp
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005576 C extracellular region
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0019752 P carboxylic acid metabolic process
GO:0046872 F metal ion binding
2900 O_BomoMG14668_internal:A_BomoMG_comp39777_c0_seq1
415bp
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
2901 O_BomoMG14669_internal:A_BomoMG_comp39777_c1_seq1
108bp
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0019901 F protein kinase binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
2902 O_BomoMG1466_complete:A_BomoMG_comp20287_c0_seq1
112bp
 hypothetical_protein_[Streptomyces_acidiscabies]
2903 O_BomoMG14670_5prime_partial:A_BomoMG_comp39777_c2_seq1
446bp
2904 O_BomoMG14673_3prime_partial:A_BomoMG_comp39780_c0_seq1
303bp
2905 O_BomoMG14674_complete:A_BomoMG_comp39780_c0_seq4
177bp
2906 O_BomoMG14676_complete:A_BomoMG_comp39782_c0_seq1
355bp
2907 O_BomoMG14679_complete:A_BomoMG_comp39782_c0_seq2
336bp
2908 O_BomoMG1467_complete:A_BomoMG_comp20290_c0_seq1
159bp
 ribosomal_protein_L35A_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005840 C ribosome
GO:0006364 P rRNA processing
GO:0006412 P translation
GO:0016020 C membrane
GO:0022625 C cytosolic large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0042273 P ribosomal large subunit biogenesis
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
2909 O_BomoMG14682_complete:A_BomoMG_comp39783_c0_seq1
471bp
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
2910 O_BomoMG14684_complete:A_BomoMG_comp39784_c0_seq2
484bp
GO:0000166 F nucleotide binding
GO:0001501 P skeletal system development
GO:0001502 P cartilage condensation
GO:0001550 P ovarian cumulus expansion
GO:0001654 P eye development
GO:0001948 F protein binding
GO:0002062 P chondrocyte differentiation
GO:0002063 P chondrocyte development
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005024 F transforming growth factor beta-activated receptor activity
GO:0005025 F transforming growth factor beta receptor activity, type I
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0006703 P estrogen biosynthetic process
GO:0006954 P inflammatory response
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0030166 P proteoglycan biosynthetic process
GO:0030425 C dendrite
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0031290 P retinal ganglion cell axon guidance
GO:0032332 P positive regulation of chondrocyte differentiation
GO:0035108 P limb morphogenesis
GO:0042698 P ovulation cycle
GO:0043010 P camera-type eye development
GO:0043025 C neuronal cell body
GO:0045597 P positive regulation of cell differentiation
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0051216 P cartilage development
GO:0060041 P retina development in camera-type eye
GO:0060350 P endochondral bone morphogenesis
GO:0061036 P positive regulation of cartilage development
GO:0071363 P cellular response to growth factor stimulus
GO:0071773 P cellular response to BMP stimulus
GO:1902043 P positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902731 P negative regulation of chondrocyte proliferation
previous next from show/16985

- SilkBase 1999-2023 -