SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2161 O_BomoMG13395_5prime_partial:A_BomoMG_comp39450_c0_seq2
577bp
GO:0000166 F nucleotide binding
GO:0001710 P mesodermal cell fate commitment
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005007 F fibroblast growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007280 P pole cell migration
GO:0007369 P gastrulation
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007431 P salivary gland development
GO:0007492 P endoderm development
GO:0007493 P endodermal cell fate determination
GO:0007498 P mesoderm development
GO:0007500 P mesodermal cell fate determination
GO:0007506 P gonadal mesoderm development
GO:0007507 P heart development
GO:0007509 P mesoderm migration involved in gastrulation
GO:0007517 P muscle organ development
GO:0007522 P visceral muscle development
GO:0007523 P larval visceral muscle development
GO:0007525 P somatic muscle development
GO:0008078 P mesodermal cell migration
GO:0008284 P positive regulation of cell population proliferation
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0008360 P regulation of cell shape
GO:0008406 P gonad development
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010001 P glial cell differentiation
GO:0010002 P cardioblast differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019233 P sensory perception of pain
GO:0021782 P glial cell development
GO:0045089 P positive regulation of innate immune response
GO:0048542 P lymph gland development
GO:0048747 P muscle cell development
GO:0050829 P defense response to Gram-negative bacterium
GO:0061320 P pericardial nephrocyte differentiation
2162 O_BomoMG13397_5prime_partial:A_BomoMG_comp39451_c0_seq1
456bp
2163 O_BomoMG13398_5prime_partial:A_BomoMG_comp39451_c0_seq2
443bp
2164 O_BomoMG13399_internal:A_BomoMG_comp39451_c0_seq3
159bp
2165 O_BomoMG133_internal:A_BomoMG_comp17290_c0_seq1
105bp
 Protein_SERAC1_[Operophtera_brumata]
GO:0005578 C extracellular matrix
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030198 P extracellular matrix organization
2166 O_BomoMG13400_5prime_partial:A_BomoMG_comp39451_c0_seq4
330bp
2167 O_BomoMG13401_5prime_partial:A_BomoMG_comp39451_c0_seq6
416bp
2168 O_BomoMG13402_5prime_partial:A_BomoMG_comp39451_c0_seq7
601bp
2169 O_BomoMG13403_5prime_partial:A_BomoMG_comp39451_c0_seq8
394bp
2170 O_BomoMG13404_5prime_partial:A_BomoMG_comp39453_c1_seq1
369bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0019904 F protein domain specific binding
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0046332 F SMAD binding
GO:0046982 F protein heterodimerization activity
GO:0070491 F DNA-binding transcription factor binding
2171 O_BomoMG13406_complete:A_BomoMG_comp39455_c0_seq1
526bp
GO:0003723 F RNA binding
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005575 C cellular_component
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0008150 P biological_process
GO:0009328 C phenylalanine-tRNA ligase complex
GO:0044822 F RNA binding
2172 O_BomoMG13407_5prime_partial:A_BomoMG_comp39456_c0_seq2
170bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
2173 O_BomoMG13408_complete:A_BomoMG_comp39456_c0_seq3
142bp
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
2174 O_BomoMG13409_complete:A_BomoMG_comp39456_c0_seq5
138bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
2175 O_BomoMG1340_5prime_partial:A_BomoMG_comp20185_c0_seq1
544bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
2176 O_BomoMG13410_complete:A_BomoMG_comp39456_c0_seq6
236bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
2177 O_BomoMG13411_3prime_partial:A_BomoMG_comp39457_c0_seq1
1222bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046875 F ephrin receptor binding
2178 O_BomoMG13414_complete:A_BomoMG_comp39457_c0_seq2
1341bp
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0042995 C cell projection
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046875 F ephrin receptor binding
2179 O_BomoMG13417_complete:A_BomoMG_comp39459_c0_seq1
589bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0016055 P Wnt signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0071222 P cellular response to lipopolysaccharide
2180 O_BomoMG13421_5prime_partial:A_BomoMG_comp39459_c0_seq2
387bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000993 F RNA polymerase II complex binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007507 P heart development
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045944 P positive regulation of transcription by RNA polymerase II
2181 O_BomoMG13425_internal:A_BomoMG_comp39460_c0_seq1
2272bp
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030097 P hemopoiesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060712 P spongiotrophoblast layer development
2182 O_BomoMG13428_5prime_partial:A_BomoMG_comp39460_c0_seq2
541bp
2183 O_BomoMG13429_5prime_partial:A_BomoMG_comp39460_c0_seq3
2325bp
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030097 P hemopoiesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060712 P spongiotrophoblast layer development
2184 O_BomoMG13432_internal:A_BomoMG_comp39460_c2_seq1
158bp
2185 O_BomoMG13434_5prime_partial:A_BomoMG_comp39461_c0_seq1
513bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
2186 O_BomoMG13435_3prime_partial:A_BomoMG_comp39461_c0_seq1
390bp
2187 O_BomoMG13436_complete:A_BomoMG_comp39461_c0_seq2
875bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
2188 O_BomoMG13439_5prime_partial:A_BomoMG_comp39461_c0_seq2
122bp
GO:0003824 F catalytic activity
GO:0004758 F serine C-palmitoyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0030170 F pyridoxal phosphate binding
2189 O_BomoMG13441_complete:A_BomoMG_comp39461_c0_seq3
875bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033227 P dsRNA transport
GO:0051033 F RNA transmembrane transporter activity
2190 O_BomoMG13445_3prime_partial:A_BomoMG_comp39461_c0_seq4
161bp
previous next from show/16985

- SilkBase 1999-2023 -