SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1831 O_BomoMG1281_complete:A_BomoMG_comp20117_c0_seq2
222bp
 NADH_dehydrogenase_ubiquinone_Fe-S_8_[Bombyx_mori]
GO:0003954 F NADH dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006979 P response to oxidative stress
GO:0008137 F NADH dehydrogenase (ubiquinone) activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
1832 O_BomoMG12820_complete:A_BomoMG_comp39293_c0_seq1
523bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
1833 O_BomoMG12821_3prime_partial:A_BomoMG_comp39294_c0_seq1
111bp
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008380 P RNA splicing
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0051301 P cell division
1834 O_BomoMG12823_complete:A_BomoMG_comp39295_c1_seq1
678bp
GO:0000922 C spindle pole
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0008352 C katanin complex
GO:0051013 P microtubule severing
GO:0051301 P cell division
1835 O_BomoMG12824_3prime_partial:A_BomoMG_comp39295_c1_seq2
499bp
GO:0000922 C spindle pole
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008017 F microtubule binding
GO:0008352 C katanin complex
GO:0051013 P microtubule severing
GO:0051301 P cell division
1836 O_BomoMG12825_complete:A_BomoMG_comp39297_c1_seq3
140bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
1837 O_BomoMG12826_complete:A_BomoMG_comp39297_c1_seq4
198bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
1838 O_BomoMG12828_3prime_partial:A_BomoMG_comp39297_c1_seq5
209bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
1839 O_BomoMG12830_5prime_partial:A_BomoMG_comp39298_c0_seq1
468bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
1840 O_BomoMG12831_3prime_partial:A_BomoMG_comp39298_c0_seq1
255bp
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0009615 P response to virus
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
1841 O_BomoMG12832_internal:A_BomoMG_comp39298_c0_seq2
686bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0009615 P response to virus
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
1842 O_BomoMG12834_3prime_partial:A_BomoMG_comp39298_c0_seq3
280bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0008150 P biological_process
GO:0044822 F RNA binding
1843 O_BomoMG12837_5prime_partial:A_BomoMG_comp39298_c0_seq4
468bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0044822 F RNA binding
1844 O_BomoMG12838_3prime_partial:A_BomoMG_comp39298_c0_seq4
243bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0009615 P response to virus
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
1845 O_BomoMG12839_5prime_partial:A_BomoMG_comp39299_c0_seq2
441bp
GO:0005215 F transporter activity
GO:0005351 F carbohydrate:proton symporter activity
GO:0005355 F glucose transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0035428 P hexose transmembrane transport
GO:0046323 P glucose import
GO:0055085 P transmembrane transport
GO:1904659 P glucose transmembrane transport
1846 O_BomoMG1283_complete:A_BomoMG_comp20121_c0_seq1
456bp
 PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
1847 O_BomoMG12841_5prime_partial:A_BomoMG_comp39299_c0_seq3
444bp
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1848 O_BomoMG12843_3prime_partial:A_BomoMG_comp39301_c0_seq1
467bp
1849 O_BomoMG12845_3prime_partial:A_BomoMG_comp39301_c0_seq2
409bp
1850 O_BomoMG12848_complete:A_BomoMG_comp39303_c0_seq1
564bp
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0009698 P phenylpropanoid metabolic process
GO:0016207 F 4-coumarate-CoA ligase activity
GO:0016874 F ligase activity
1851 O_BomoMG12852_complete:A_BomoMG_comp39304_c0_seq1
778bp
GO:0004576 F oligosaccharyl transferase activity
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006516 P glycoprotein catabolic process
GO:0006986 P response to unfolded protein
GO:0008250 C oligosaccharyltransferase complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0043686 P co-translational protein modification
GO:0043687 P post-translational protein modification
1852 O_BomoMG12853_complete:A_BomoMG_comp39304_c0_seq2
755bp
GO:0004576 F oligosaccharyl transferase activity
GO:0004579 F dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006486 P protein glycosylation
GO:0006516 P glycoprotein catabolic process
GO:0006986 P response to unfolded protein
GO:0008250 C oligosaccharyltransferase complex
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0043686 P co-translational protein modification
GO:0043687 P post-translational protein modification
1853 O_BomoMG12854_complete:A_BomoMG_comp39305_c0_seq1
473bp
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
1854 O_BomoMG12855_5prime_partial:A_BomoMG_comp39305_c0_seq2
491bp
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
1855 O_BomoMG12856_5prime_partial:A_BomoMG_comp39306_c0_seq1
847bp
1856 O_BomoMG12858_5prime_partial:A_BomoMG_comp39306_c0_seq2
290bp
1857 O_BomoMG1285_5prime_partial:A_BomoMG_comp20123_c0_seq1
324bp
 PREDICTED:_serine/threonine-protein_phosphatase_PP1-beta_catalytic_subunit_[Papilio_polytes]
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0006470 P protein dephosphorylation
GO:0007049 P cell cycle
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0030155 P regulation of cell adhesion
GO:0046872 F metal ion binding
GO:0050115 F myosin-light-chain-phosphatase activity
GO:0051301 P cell division
GO:0072357 C PTW/PP1 phosphatase complex
1858 O_BomoMG12860_complete:A_BomoMG_comp39307_c0_seq1
501bp
GO:0000055 P ribosomal large subunit export from nucleus
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0043023 F ribosomal large subunit binding
GO:0044822 F RNA binding
1859 O_BomoMG12861_complete:A_BomoMG_comp39307_c0_seq2
506bp
GO:0000055 P ribosomal large subunit export from nucleus
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0043023 F ribosomal large subunit binding
GO:0044822 F RNA binding
1860 O_BomoMG12864_complete:A_BomoMG_comp39309_c0_seq2
283bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0008285 P negative regulation of cell population proliferation
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0031398 P positive regulation of protein ubiquitination
GO:0060510 P type II pneumocyte differentiation
GO:1901216 P positive regulation of neuron death
previous next from show/16985

- SilkBase 1999-2023 -