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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1291 O_BomoMG11967_complete:A_BomoMG_comp38945_c0_seq2
413bp
 PREDICTED:_putative_serine/threonine-protein_kinase_haspin_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
GO:0072354 F histone kinase activity (H3-T3 specific)
GO:0072355 P histone H3-T3 phosphorylation
1292 O_BomoMG11968_5prime_partial:A_BomoMG_comp38947_c0_seq1
225bp
 PREDICTED:_serine/threonine_kinase_LKB1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001944 P vasculature development
GO:0002039 F p53 binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0010212 P response to ionizing radiation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030010 P establishment of cell polarity
GO:0030295 F protein kinase activator activity
GO:0030308 P negative regulation of cell growth
GO:0032147 P activation of protein kinase activity
GO:0042593 P glucose homeostasis
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
1293 O_BomoMG11969_internal:A_BomoMG_comp38947_c0_seq2
140bp
 PREDICTED:_serine/threonine_kinase_LKB1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001558 P regulation of cell growth
GO:0001944 P vasculature development
GO:0002039 F p53 binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0010212 P response to ionizing radiation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030010 P establishment of cell polarity
GO:0030295 F protein kinase activator activity
GO:0030308 P negative regulation of cell growth
GO:0032147 P activation of protein kinase activity
GO:0042593 P glucose homeostasis
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
1294 O_BomoMG11970_3prime_partial:A_BomoMG_comp38949_c0_seq1
611bp
 PREDICTED:_neurofilament_heavy_polypeptide-like_[Bombyx_mori]
1295 O_BomoMG11974_3prime_partial:A_BomoMG_comp38949_c0_seq2
588bp
 PREDICTED:_neurofilament_heavy_polypeptide-like_[Bombyx_mori]
1296 O_BomoMG11978_5prime_partial:A_BomoMG_comp38951_c1_seq1
204bp
 PREDICTED:_protein_RRNAD1-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1297 O_BomoMG1197_internal:A_BomoMG_comp20008_c0_seq1
302bp
 putative_stromal_antigen_[Danaus_plexippus]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0016925 P protein sumoylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
1298 O_BomoMG11980_5prime_partial:A_BomoMG_comp38952_c0_seq1
235bp
 PREDICTED:_uncharacterized_protein_KIAA0195,_partial_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1299 O_BomoMG11983_5prime_partial:A_BomoMG_comp38952_c0_seq2
153bp
 PREDICTED:_uncharacterized_protein_KIAA0195,_partial_[Bombyx_mori]
GO:0005654 C nucleoplasm
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1300 O_BomoMG11985_internal:A_BomoMG_comp38953_c1_seq1
392bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX42_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
1301 O_BomoMG11986_3prime_partial:A_BomoMG_comp38954_c0_seq1
277bp
 PREDICTED:_uncharacterized_protein_LOC101737521_[Bombyx_mori]
1302 O_BomoMG11988_5prime_partial:A_BomoMG_comp38954_c0_seq3
363bp
 PREDICTED:_zinc_finger_and_BTB_domain-containing_protein_41-like_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
1303 O_BomoMG1198_internal:A_BomoMG_comp20008_c0_seq2
326bp
 putative_stromal_antigen_[Danaus_plexippus]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005829 C cytosol
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0016925 P protein sumoylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
1304 O_BomoMG11991_5prime_partial:A_BomoMG_comp38955_c0_seq1
527bp
 PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
1305 O_BomoMG11992_5prime_partial:A_BomoMG_comp38955_c0_seq2
173bp
 PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
1306 O_BomoMG11994_5prime_partial:A_BomoMG_comp38955_c0_seq3
318bp
 PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
1307 O_BomoMG11995_5prime_partial:A_BomoMG_comp38955_c0_seq4
382bp
 PREDICTED:_pre-mRNA-processing_factor_19_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001833 P inner cell mass cell proliferation
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0008610 P lipid biosynthetic process
GO:0010498 P proteasomal protein catabolic process
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0034450 F ubiquitin-ubiquitin ligase activity
GO:0034613 P cellular protein localization
GO:0035861 C site of double-strand break
GO:0042802 F identical protein binding
GO:0045665 P negative regulation of neuron differentiation
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048711 P positive regulation of astrocyte differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0071013 C catalytic step 2 spliceosome
GO:0072422 P DNA damage checkpoint signaling
1308 O_BomoMG11998_3prime_partial:A_BomoMG_comp38959_c0_seq1
112bp
 orotidine_5'-phosphate_decarboxylase_[Caldithrix_abyssi]
1309 O_BomoMG11999_3prime_partial:A_BomoMG_comp38959_c0_seq2
402bp
 PREDICTED:_protein_arginine_N-methyltransferase_5_isoform_X1_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0048511 P rhythmic process
GO:0090161 P Golgi ribbon formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
1310 O_BomoMG1199_internal:A_BomoMG_comp20011_c0_seq1
115bp
 serine_protease_precursor_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
GO:0030574 P collagen catabolic process
1311 O_BomoMG119_internal:A_BomoMG_comp17246_c0_seq1
113bp
 PREDICTED:_attractin-like_protein_1_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006954 P inflammatory response
GO:0006979 P response to oxidative stress
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021549 P cerebellum development
GO:0030246 F carbohydrate binding
GO:0040014 P regulation of multicellular organism growth
GO:0042552 P myelination
GO:0043473 P pigmentation
GO:0070062 C extracellular exosome
1312 O_BomoMG12000_3prime_partial:A_BomoMG_comp38959_c0_seq3
386bp
 PREDICTED:_protein_arginine_N-methyltransferase_5_isoform_X2_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003714 F transcription corepressor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008327 F methyl-CpG binding
GO:0008469 F histone-arginine N-methyltransferase activity
GO:0016274 F protein-arginine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018216 P peptidyl-arginine methylation
GO:0019918 P peptidyl-arginine methylation, to symmetrical-dimethyl arginine
GO:0032259 P methylation
GO:0032922 P circadian regulation of gene expression
GO:0034709 C methylosome
GO:0035243 F protein-arginine omega-N symmetric methyltransferase activity
GO:0035246 P peptidyl-arginine N-methylation
GO:0042118 P endothelial cell activation
GO:0043985 P histone H4-R3 methylation
GO:0044020 F histone methyltransferase activity (H4-R3 specific)
GO:0048511 P rhythmic process
GO:0090161 P Golgi ribbon formation
GO:1903507 P negative regulation of nucleic acid-templated transcription
1313 O_BomoMG12001_complete:A_BomoMG_comp38960_c0_seq1
379bp
 Alpha-methylacyl-CoA_racemase_[Operophtera_brumata]
GO:0003824 F catalytic activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0006631 P fatty acid metabolic process
GO:0006699 P bile acid biosynthetic process
GO:0008111 F alpha-methylacyl-CoA racemase activity
GO:0008206 P bile acid metabolic process
GO:0008300 P isoprenoid catabolic process
GO:0016853 F isomerase activity
1314 O_BomoMG12006_5prime_partial:A_BomoMG_comp38965_c0_seq1
535bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
1315 O_BomoMG12007_3prime_partial:A_BomoMG_comp38965_c0_seq1
424bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
1316 O_BomoMG1200_5prime_partial:A_BomoMG_comp20015_c0_seq1
250bp
 PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX52_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
1317 O_BomoMG12011_internal:A_BomoMG_comp38965_c0_seq2
935bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
1318 O_BomoMG12015_5prime_partial:A_BomoMG_comp38965_c0_seq3
535bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
1319 O_BomoMG12016_3prime_partial:A_BomoMG_comp38965_c0_seq3
398bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
1320 O_BomoMG12019_internal:A_BomoMG_comp38965_c0_seq4
909bp
 PREDICTED:_PAX-interacting_protein_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
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