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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2971 O_BomoFB12675_3prime_partial:A_BomoFB_comp10265_c0_seq1
319bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
2972 O_BomoFB12676_complete:A_BomoFB_comp10266_c0_seq1
177bp
 PREDICTED:_uncharacterized_protein_LOC101735657_isoform_X3_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
2973 O_BomoFB12677_complete:A_BomoFB_comp10266_c0_seq3
161bp
 PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
2974 O_BomoFB12678_complete:A_BomoFB_comp10266_c0_seq3
145bp
 hypothetical_protein_M438DRAFT_353303_[Aureobasidium_pullulans_EXF-150]
2975 O_BomoFB12679_complete:A_BomoFB_comp10266_c0_seq4
282bp
 PREDICTED:_alpha-tocopherol_transfer_protein-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0006810 P transport
GO:0016020 C membrane
2976 O_BomoFB1267_complete:A_BomoFB_comp3051_c0_seq1
100bp
 hypothetical_protein_FG05_30424_[Fusarium_graminearum]
2977 O_BomoFB12680_complete:A_BomoFB_comp10266_c0_seq4
145bp
 hypothetical_protein_M438DRAFT_353303_[Aureobasidium_pullulans_EXF-150]
2978 O_BomoFB12681_5prime_partial:A_BomoFB_comp10267_c1_seq1
137bp
 PREDICTED:_uncharacterized_protein_LOC106143484_[Amyelois_transitella]
2979 O_BomoFB12682_complete:A_BomoFB_comp10268_c0_seq1
232bp
 PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X7_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
2980 O_BomoFB12683_complete:A_BomoFB_comp10268_c0_seq1
197bp
 histidine_kinase_[Streptomyces_flavidovirens]
2981 O_BomoFB12684_complete:A_BomoFB_comp10268_c0_seq1
142bp
 RNA-binding_protein_41,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
2982 O_BomoFB12685_complete:A_BomoFB_comp10268_c0_seq1
104bp
 PREDICTED:_high_affinity_immunoglobulin_gamma_Fc_receptor_I-like_[Cyprinodon_variegatus]
2983 O_BomoFB12686_complete:A_BomoFB_comp10268_c0_seq3
246bp
 PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
2984 O_BomoFB12687_complete:A_BomoFB_comp10268_c0_seq3
109bp
 PREDICTED:_glycylpeptide_N-tetradecanoyltransferase_1_[Opisthocomus_hoazin]
2985 O_BomoFB12688_complete:A_BomoFB_comp10268_c0_seq3
107bp
 hypothetical_protein_Z520_00932_[Fonsecaea_multimorphosa_CBS_102226]
2986 O_BomoFB12689_complete:A_BomoFB_comp10268_c0_seq5
232bp
 PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X7_[Bombyx_mori]
GO:0000228 C nuclear chromosome
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
2987 O_BomoFB1268_3prime_partial:A_BomoFB_comp3052_c0_seq1
219bp
 Poly(U)-binding-splicing_factor_half_pint,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001558 P regulation of cell growth
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007282 P cystoblast division
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0051726 P regulation of cell cycle
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2988 O_BomoFB12690_complete:A_BomoFB_comp10268_c0_seq5
197bp
 histidine_kinase_[Streptomyces_flavidovirens]
2989 O_BomoFB12691_complete:A_BomoFB_comp10268_c0_seq5
142bp
 RNA-binding_protein_41,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
2990 O_BomoFB12692_complete:A_BomoFB_comp10268_c0_seq5
104bp
 PREDICTED:_high_affinity_immunoglobulin_gamma_Fc_receptor_I-like_[Cyprinodon_variegatus]
2991 O_BomoFB12693_complete:A_BomoFB_comp10268_c0_seq6
533bp
 PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_E_member_1_isoform_X4_[Bombyx_mori]
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
2992 O_BomoFB12694_complete:A_BomoFB_comp10268_c0_seq6
197bp
 histidine_kinase_[Streptomyces_flavidovirens]
2993 O_BomoFB12695_complete:A_BomoFB_comp10268_c0_seq6
142bp
 RNA-binding_protein_41,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
2994 O_BomoFB12696_complete:A_BomoFB_comp10268_c0_seq6
109bp
 PREDICTED:_glycylpeptide_N-tetradecanoyltransferase_1_[Opisthocomus_hoazin]
2995 O_BomoFB12697_complete:A_BomoFB_comp10268_c0_seq6
107bp
 hypothetical_protein_Z520_00932_[Fonsecaea_multimorphosa_CBS_102226]
2996 O_BomoFB12698_complete:A_BomoFB_comp10268_c0_seq6
104bp
 PREDICTED:_high_affinity_immunoglobulin_gamma_Fc_receptor_I-like_[Cyprinodon_variegatus]
2997 O_BomoFB12699_complete:A_BomoFB_comp10269_c0_seq1
348bp
 PREDICTED:_uncharacterized_protein_LOC101738360_[Bombyx_mori]
2998 O_BomoFB1269_complete:A_BomoFB_comp3052_c0_seq1
164bp
 hypothetical_protein_ALC62_13146_[Cyphomyrmex_costatus]
2999 O_BomoFB126_internal:A_BomoFB_comp331_c1_seq1
189bp
 PREDICTED:_F-box/LRR-repeat_protein_15_[Amyelois_transitella]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0009953 P dorsal/ventral pattern formation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0030282 P bone mineralization
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
3000 O_BomoFB12700_complete:A_BomoFB_comp10269_c0_seq2
147bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
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