SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1981 O_BomoFB11784_5prime_partial:A_BomoFB_comp10106_c1_seq2
251bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
1982 O_BomoFB11785_complete:A_BomoFB_comp10106_c1_seq2
104bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
1983 O_BomoFB11786_5prime_partial:A_BomoFB_comp10106_c1_seq3
112bp
1984 O_BomoFB11787_5prime_partial:A_BomoFB_comp10107_c0_seq1
387bp
 Organic_cation_transporter_[Operophtera_brumata]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1985 O_BomoFB11788_complete:A_BomoFB_comp10107_c0_seq1
104bp
 PKD_domain-containing_protein_[Methanobacterium_lacus]
1986 O_BomoFB11789_3prime_partial:A_BomoFB_comp10107_c1_seq1
160bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1987 O_BomoFB1178_complete:A_BomoFB_comp2959_c0_seq2
183bp
 hypothetical_protein_AR276_07850_[Stenotrophomonas_maltophilia]
1988 O_BomoFB11790_3prime_partial:A_BomoFB_comp10107_c1_seq2
160bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
1989 O_BomoFB11791_complete:A_BomoFB_comp10108_c0_seq1
256bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1990 O_BomoFB11792_complete:A_BomoFB_comp10108_c0_seq2
243bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Papilio_xuthus]
GO:0005515 F protein binding
1991 O_BomoFB11793_complete:A_BomoFB_comp10108_c0_seq3
709bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
1992 O_BomoFB11794_complete:A_BomoFB_comp10108_c0_seq4
696bp
 PREDICTED:_leukocyte_receptor_cluster_member_8_homolog_[Amyelois_transitella]
GO:0005515 F protein binding
1993 O_BomoFB11795_complete:A_BomoFB_comp10109_c1_seq2
342bp
 PREDICTED:_secretory_carrier-associated_membrane_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008021 C synaptic vesicle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0042589 C zymogen granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045202 C synapse
GO:0055038 C recycling endosome membrane
1994 O_BomoFB11796_complete:A_BomoFB_comp10109_c1_seq3
257bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1995 O_BomoFB11797_complete:A_BomoFB_comp10109_c1_seq3
103bp
 hypothetical_protein_LPMP_204520_[Leishmania_panamensis]
1996 O_BomoFB11798_complete:A_BomoFB_comp10109_c1_seq4
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
1997 O_BomoFB11799_complete:A_BomoFB_comp10109_c1_seq4
104bp
 PREDICTED:_pentatricopeptide_repeat-containing_protein_At3g54980,_mitochondrial-like_[Nicotiana_tomentosiformis]
1998 O_BomoFB1179_complete:A_BomoFB_comp2960_c0_seq1
461bp
 hypothetical_protein_KGM_20561_[Danaus_plexippus]
GO:0003333 P amino acid transmembrane transport
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015196 F L-tryptophan transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015808 P L-alanine transport
GO:0015824 P proline transport
GO:0015827 P tryptophan transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
1999 O_BomoFB117_3prime_partial:A_BomoFB_comp313_c1_seq1
143bp
 hypothetical_protein_KGM_16637_[Danaus_plexippus]
2000 O_BomoFB11800_complete:A_BomoFB_comp10109_c2_seq1
257bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2001 O_BomoFB11801_complete:A_BomoFB_comp10109_c2_seq1
103bp
 hypothetical_protein_LPMP_204520_[Leishmania_panamensis]
2002 O_BomoFB11802_complete:A_BomoFB_comp10109_c2_seq2
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2003 O_BomoFB11803_complete:A_BomoFB_comp10109_c2_seq3
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
2004 O_BomoFB11804_complete:A_BomoFB_comp10109_c2_seq3
104bp
 PREDICTED:_pentatricopeptide_repeat-containing_protein_At3g54980,_mitochondrial-like_[Nicotiana_tomentosiformis]
2005 O_BomoFB11805_complete:A_BomoFB_comp10109_c2_seq7
342bp
 PREDICTED:_secretory_carrier-associated_membrane_protein_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0008021 C synaptic vesicle
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0042589 C zymogen granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045202 C synapse
GO:0055038 C recycling endosome membrane
2006 O_BomoFB11806_3prime_partial:A_BomoFB_comp10110_c0_seq1
3876bp
 PREDICTED:_ryanodine_receptor_44F_isoform_X21_[Bombyx_mori]
GO:0005216 F ion channel activity
GO:0005219 F ryanodine-sensitive calcium-release channel activity
GO:0005262 F calcium channel activity
GO:0005789 C endoplasmic reticulum membrane
GO:0005875 C microtubule associated complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006936 P muscle contraction
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016529 C sarcoplasmic reticulum
GO:0033017 C sarcoplasmic reticulum membrane
GO:0035206 P regulation of hemocyte proliferation
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0055085 P transmembrane transport
GO:0060047 P heart contraction
GO:0070588 P calcium ion transmembrane transport
GO:0072347 P response to anesthetic
2007 O_BomoFB11807_complete:A_BomoFB_comp10110_c0_seq1
140bp
 PREDICTED:_pleckstrin_homology_domain-containing_family_A_member_3_isoform_X1_[Lepisosteus_oculatus]
2008 O_BomoFB11808_complete:A_BomoFB_comp10110_c0_seq1
127bp
 hypothetical_protein_HMPREF0649_02452_[Prevotella_buccae_D17]
2009 O_BomoFB11809_complete:A_BomoFB_comp10110_c0_seq1
120bp
 hypothetical_protein_WN51_13661_[Melipona_quadrifasciata]
2010 O_BomoFB1180_complete:A_BomoFB_comp2964_c0_seq1
1055bp
 PREDICTED:_leucine-rich_PPR_motif-containing_protein,_mitochondrial-like_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
previous next from show/25536

- SilkBase 1999-2023 -