SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1111 O_BomoFB10_internal:A_BomoFB_comp34_c1_seq1
135bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
1112 O_BomoFB11000_complete:A_BomoFB_comp9939_c0_seq2
510bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1113 O_BomoFB11001_complete:A_BomoFB_comp9939_c0_seq3
302bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1114 O_BomoFB11002_complete:A_BomoFB_comp9939_c0_seq3
209bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1115 O_BomoFB11003_complete:A_BomoFB_comp9939_c0_seq4
510bp
 PREDICTED:_abhydrolase_domain-containing_protein_16A_isoform_X2_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
1116 O_BomoFB11004_complete:A_BomoFB_comp9940_c0_seq1
415bp
 PREDICTED:_DNA-binding_protein_D-ETS-3_isoform_X2_[Amyelois_transitella]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0008219 P cell death
GO:0035071 P salivary gland cell autophagic cell death
GO:0040034 P regulation of development, heterochronic
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048477 P oogenesis
1117 O_BomoFB11005_complete:A_BomoFB_comp9940_c0_seq1
134bp
 DEHA2E20020p_[Debaryomyces_hansenii_CBS767]
1118 O_BomoFB11006_complete:A_BomoFB_comp9940_c0_seq1
117bp
1119 O_BomoFB11007_complete:A_BomoFB_comp9941_c0_seq1
326bp
 PREDICTED:_histone-lysine_N-methyltransferase_ASHR1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
1120 O_BomoFB11008_complete:A_BomoFB_comp9941_c0_seq2
493bp
 PREDICTED:_histone-lysine_N-methyltransferase_ASHR1_[Bombyx_mori]
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000993 F RNA polymerase II complex binding
GO:0001162 F RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006469 P negative regulation of protein kinase activity
GO:0008168 F methyltransferase activity
GO:0014904 P myotube cell development
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0032259 P methylation
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0034968 P histone lysine methylation
GO:0045184 P establishment of protein localization
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0071549 P cellular response to dexamethasone stimulus
1121 O_BomoFB11009_complete:A_BomoFB_comp9942_c0_seq1
826bp
 PREDICTED:_irregular_chiasm_C-roughest_protein-like_isoform_X1_[Bombyx_mori]
GO:0001745 P compound eye morphogenesis
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005913 C adherens junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007409 P axonogenesis
GO:0007520 P myoblast fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016202 P regulation of striated muscle tissue development
GO:0030165 F PDZ domain binding
GO:0042802 F identical protein binding
GO:0045177 C apical part of cell
GO:0046331 P lateral inhibition
GO:0046666 P retinal cell programmed cell death
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048749 P compound eye development
1122 O_BomoFB1100_complete:A_BomoFB_comp2893_c0_seq2
262bp
 PREDICTED:_putative_OPA3-like_protein_CG13603_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0019216 P regulation of lipid metabolic process
1123 O_BomoFB11010_complete:A_BomoFB_comp9942_c0_seq1
206bp
 hypothetical_protein_[Actinomyces_israelii]
1124 O_BomoFB11011_complete:A_BomoFB_comp9942_c0_seq1
135bp
 PREDICTED:_glucose_dehydrogenase_[FAD,_quinone]-like_[Neodiprion_lecontei]
1125 O_BomoFB11012_complete:A_BomoFB_comp9942_c0_seq1
103bp
 hypothetical_protein_[Alkaliflexus_imshenetskii]
1126 O_BomoFB11013_complete:A_BomoFB_comp9943_c0_seq1
193bp
 ras-like_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
1127 O_BomoFB11014_complete:A_BomoFB_comp9943_c0_seq1
101bp
 polyketide_synthase_[Myceliophthora_thermophila_ATCC_42464]
1128 O_BomoFB11015_complete:A_BomoFB_comp9944_c0_seq1
634bp
 PREDICTED:_sodium-independent_sulfate_anion_transporter_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
1129 O_BomoFB11016_complete:A_BomoFB_comp9944_c0_seq1
124bp
 hypothetical_protein_FF38_00118_[Lucilia_cuprina]
1130 O_BomoFB11017_complete:A_BomoFB_comp9944_c0_seq1
104bp
 porin_[Burkholderia_gladioli]
1131 O_BomoFB11018_complete:A_BomoFB_comp9945_c0_seq1
838bp
 acinus_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
1132 O_BomoFB11019_complete:A_BomoFB_comp9945_c0_seq2
838bp
 acinus_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
1133 O_BomoFB1101_complete:A_BomoFB_comp2895_c0_seq1
317bp
 PREDICTED:_transcription_factor_GAGA-like_[Papilio_xuthus]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0007275 P multicellular organism development
GO:0007458 P progression of morphogenetic furrow involved in compound eye morphogenesis
GO:0007552 P metamorphosis
GO:0007562 P eclosion
GO:0008219 P cell death
GO:0009608 P response to symbiont
GO:0010629 P negative regulation of gene expression
GO:0010906 P regulation of glucose metabolic process
GO:0030707 P ovarian follicle cell development
GO:0035070 P salivary gland histolysis
GO:0035071 P salivary gland cell autophagic cell death
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035075 P response to ecdysone
GO:0035193 P larval central nervous system remodeling
GO:0040034 P regulation of development, heterochronic
GO:0042332 P gravitaxis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0048747 P muscle cell development
GO:0048808 P male genitalia morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0071390 P cellular response to ecdysone
1134 O_BomoFB11020_3prime_partial:A_BomoFB_comp9946_c0_seq1
187bp
 pro-phenol_oxidase_[Bombyx_mandarina]
GO:0004497 F monooxygenase activity
GO:0004503 F tyrosinase activity
GO:0005576 C extracellular region
GO:0006583 P melanin biosynthetic process from tyrosine
GO:0006952 P defense response
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042438 P melanin biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
1135 O_BomoFB11021_5prime_partial:A_BomoFB_comp9946_c0_seq1
121bp
 hypothetical_protein_[Streptomyces_rimosus]
1136 O_BomoFB11022_3prime_partial:A_BomoFB_comp9946_c0_seq2
678bp
 prophenoloxidase-1_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0004503 F tyrosinase activity
GO:0005576 C extracellular region
GO:0006583 P melanin biosynthetic process from tyrosine
GO:0006952 P defense response
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0042438 P melanin biosynthetic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
1137 O_BomoFB11023_complete:A_BomoFB_comp9946_c0_seq2
182bp
 alpha,alpha-phosphotrehalase_[Buttiauxella_agrestis]
1138 O_BomoFB11024_5prime_partial:A_BomoFB_comp9946_c0_seq2
128bp
 tRNA_guanosine(34)_transglycosylase_Tgt_[Labrenzia_aggregata]
1139 O_BomoFB11025_complete:A_BomoFB_comp9948_c0_seq1
270bp
 PREDICTED:_UPF0528_protein_CG10038_[Amyelois_transitella]
GO:0005576 C extracellular region
1140 O_BomoFB11026_complete:A_BomoFB_comp9948_c0_seq2
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
previous next from show/25536

- SilkBase 1999-2023 -