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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9031 O_BomoEE18129_complete:A_BomoEE_comp69254_c0_seq5
152bp
9032 O_BomoEE1812_complete:A_BomoEE_comp32804_c0_seq1
101bp
9033 O_BomoEE18130_complete:A_BomoEE_comp69255_c0_seq2
418bp
 PREDICTED:_TRAF6_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000209 P protein polyubiquitination
GO:0001503 P ossification
GO:0001843 P neural tube closure
GO:0002376 P immune system process
GO:0002726 P positive regulation of T cell cytokine production
GO:0004842 F ubiquitin-protein transferase activity
GO:0005164 F tumor necrosis factor receptor binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006955 P immune response
GO:0007165 P signal transduction
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0007250 P activation of NF-kappaB-inducing kinase activity
GO:0008270 F zinc ion binding
GO:0009887 P animal organ morphogenesis
GO:0009898 C cytoplasmic side of plasma membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0019901 F protein kinase binding
GO:0030316 P osteoclast differentiation
GO:0031435 F mitogen-activated protein kinase kinase kinase binding
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0031666 P positive regulation of lipopolysaccharide-mediated signaling pathway
GO:0031996 F thioesterase binding
GO:0032147 P activation of protein kinase activity
GO:0032743 P positive regulation of interleukin-2 production
GO:0035631 C CD40 receptor complex
GO:0042088 P T-helper 1 type immune response
GO:0042102 P positive regulation of T cell proliferation
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042802 F identical protein binding
GO:0042826 F histone deacetylase binding
GO:0042981 P regulation of apoptotic process
GO:0043011 P myeloid dendritic cell differentiation
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 C protein-containing complex
GO:0043422 F protein kinase B binding
GO:0043507 P positive regulation of JUN kinase activity
GO:0045084 P positive regulation of interleukin-12 production
GO:0045410 P positive regulation of interleukin-6 production
GO:0045453 P bone resorption
GO:0045672 P positive regulation of osteoclast differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046849 P bone remodeling
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0048468 P cell development
GO:0048471 C perinuclear region of cytoplasm
GO:0050852 P T cell receptor signaling pathway
GO:0051023 P regulation of immunoglobulin production
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070498 P interleukin-1-mediated signaling pathway
GO:0070534 P protein K63-linked ubiquitination
GO:0070555 P response to interleukin-1
GO:0071222 P cellular response to lipopolysaccharide
GO:2000679 P positive regulation of transcription regulatory region DNA binding
9034 O_BomoEE18131_complete:A_BomoEE_comp69256_c0_seq1
400bp
 PREDICTED:_kelch_domain-containing_protein_10_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0032874 P positive regulation of stress-activated MAPK cascade
9035 O_BomoEE18132_complete:A_BomoEE_comp69257_c0_seq1
672bp
 PREDICTED:_ras-associated_and_pleckstrin_homology_domains-containing_protein_1_isoform_X1_[Bombyx_mori]
9036 O_BomoEE18133_complete:A_BomoEE_comp69257_c0_seq1
125bp
9037 O_BomoEE18134_complete:A_BomoEE_comp69257_c0_seq2
669bp
 PREDICTED:_ras-associated_and_pleckstrin_homology_domains-containing_protein_1_isoform_X1_[Bombyx_mori]
9038 O_BomoEE18135_complete:A_BomoEE_comp69257_c0_seq2
125bp
9039 O_BomoEE18136_complete:A_BomoEE_comp69257_c0_seq2
113bp
9040 O_BomoEE18137_complete:A_BomoEE_comp69257_c0_seq3
673bp
 PREDICTED:_ras-associated_and_pleckstrin_homology_domains-containing_protein_1_isoform_X1_[Bombyx_mori]
9041 O_BomoEE18138_complete:A_BomoEE_comp69257_c0_seq3
125bp
9042 O_BomoEE18139_3prime_partial:A_BomoEE_comp69261_c0_seq1
414bp
 PREDICTED:_polycomb_protein_suz12-B_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001739 C sex chromatin
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008284 P positive regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016574 P histone ubiquitination
GO:0031490 F chromatin DNA binding
GO:0032993 C protein-DNA complex
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0042054 F histone methyltransferase activity
GO:0043565 F sequence-specific DNA binding
GO:0045596 P negative regulation of cell differentiation
GO:0045814 P negative regulation of gene expression, epigenetic
GO:0046872 F metal ion binding
9043 O_BomoEE1813_complete:A_BomoEE_comp32805_c0_seq1
162bp
 PREDICTED:_uncharacterized_protein_LOC101743098,_partial_[Bombyx_mori]
9044 O_BomoEE18140_3prime_partial:A_BomoEE_comp69261_c0_seq2
473bp
 PREDICTED:_polycomb_protein_suz12-B_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001739 C sex chromatin
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008284 P positive regulation of cell population proliferation
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016574 P histone ubiquitination
GO:0031490 F chromatin DNA binding
GO:0032993 C protein-DNA complex
GO:0035064 F methylated histone binding
GO:0035098 C ESC/E(Z) complex
GO:0042054 F histone methyltransferase activity
GO:0043565 F sequence-specific DNA binding
GO:0045596 P negative regulation of cell differentiation
GO:0045814 P negative regulation of gene expression, epigenetic
GO:0046872 F metal ion binding
9045 O_BomoEE18141_complete:A_BomoEE_comp69263_c0_seq4
1221bp
 PREDICTED:_copper-transporting_ATPase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001974 P blood vessel remodeling
GO:0002082 P regulation of oxidative phosphorylation
GO:0004008 F P-type divalent copper transporter activity
GO:0005375 F copper ion transmembrane transporter activity
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006568 P tryptophan metabolic process
GO:0006584 P catecholamine metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0007005 P mitochondrion organization
GO:0007595 P lactation
GO:0007626 P locomotory behavior
GO:0010041 P response to iron(III) ion
GO:0010043 P response to zinc ion
GO:0010273 P detoxification of copper ion
GO:0015677 P copper ion import
GO:0015679 P plasma membrane copper ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016532 F superoxide dismutase copper chaperone activity
GO:0016787 F hydrolase activity
GO:0018205 P peptidyl-lysine modification
GO:0019430 P removal of superoxide radicals
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021860 P pyramidal neuron development
GO:0021954 P central nervous system neuron development
GO:0030001 P metal ion transport
GO:0030140 C trans-Golgi network transport vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031069 P hair follicle morphogenesis
GO:0031526 C brush border membrane
GO:0032767 F copper-dependent protein binding
GO:0034220 P ion transmembrane transport
GO:0042093 P T-helper cell differentiation
GO:0042414 P epinephrine metabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042417 P dopamine metabolic process
GO:0042428 P serotonin metabolic process
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043085 P positive regulation of catalytic activity
GO:0043473 P pigmentation
GO:0043588 P skin development
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0048251 P elastic fiber assembly
GO:0048286 P lung alveolus development
GO:0048471 C perinuclear region of cytoplasm
GO:0048553 P negative regulation of catalytic activity
GO:0048554 P positive regulation of catalytic activity
GO:0048812 P neuron projection morphogenesis
GO:0051216 P cartilage development
GO:0051353 P positive regulation of oxidoreductase activity
GO:0051542 P elastin biosynthetic process
GO:0060003 P copper ion export
9046 O_BomoEE18142_complete:A_BomoEE_comp69263_c0_seq4
161bp
 hypothetical_protein_ACD_22C00064G0001_[uncultured_bacterium]
9047 O_BomoEE18143_complete:A_BomoEE_comp69263_c0_seq4
138bp
9048 O_BomoEE18144_complete:A_BomoEE_comp69263_c0_seq4
120bp
9049 O_BomoEE18145_complete:A_BomoEE_comp69263_c0_seq4
110bp
9050 O_BomoEE18146_complete:A_BomoEE_comp69263_c0_seq4
106bp
9051 O_BomoEE18147_complete:A_BomoEE_comp69263_c0_seq4
105bp
 Uncharacterised_protein_[Streptococcus_pneumoniae]
9052 O_BomoEE18148_complete:A_BomoEE_comp69263_c0_seq5
1246bp
 PREDICTED:_copper-transporting_ATPase_1_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001568 P blood vessel development
GO:0001701 P in utero embryonic development
GO:0001974 P blood vessel remodeling
GO:0002082 P regulation of oxidative phosphorylation
GO:0004008 F P-type divalent copper transporter activity
GO:0005375 F copper ion transmembrane transporter activity
GO:0005507 F copper ion binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006568 P tryptophan metabolic process
GO:0006584 P catecholamine metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006825 P copper ion transport
GO:0006878 P cellular copper ion homeostasis
GO:0007005 P mitochondrion organization
GO:0007595 P lactation
GO:0007626 P locomotory behavior
GO:0010041 P response to iron(III) ion
GO:0010043 P response to zinc ion
GO:0010273 P detoxification of copper ion
GO:0015677 P copper ion import
GO:0015679 P plasma membrane copper ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016323 C basolateral plasma membrane
GO:0016532 F superoxide dismutase copper chaperone activity
GO:0016787 F hydrolase activity
GO:0018205 P peptidyl-lysine modification
GO:0019430 P removal of superoxide radicals
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0021702 P cerebellar Purkinje cell differentiation
GO:0021860 P pyramidal neuron development
GO:0021954 P central nervous system neuron development
GO:0030001 P metal ion transport
GO:0030140 C trans-Golgi network transport vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030199 P collagen fibril organization
GO:0031069 P hair follicle morphogenesis
GO:0031526 C brush border membrane
GO:0032767 F copper-dependent protein binding
GO:0034220 P ion transmembrane transport
GO:0042093 P T-helper cell differentiation
GO:0042414 P epinephrine metabolic process
GO:0042415 P norepinephrine metabolic process
GO:0042417 P dopamine metabolic process
GO:0042428 P serotonin metabolic process
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043085 P positive regulation of catalytic activity
GO:0043473 P pigmentation
GO:0043588 P skin development
GO:0046688 P response to copper ion
GO:0046872 F metal ion binding
GO:0048251 P elastic fiber assembly
GO:0048286 P lung alveolus development
GO:0048471 C perinuclear region of cytoplasm
GO:0048553 P negative regulation of catalytic activity
GO:0048554 P positive regulation of catalytic activity
GO:0048812 P neuron projection morphogenesis
GO:0051216 P cartilage development
GO:0051353 P positive regulation of oxidoreductase activity
GO:0051542 P elastin biosynthetic process
GO:0060003 P copper ion export
9053 O_BomoEE18149_complete:A_BomoEE_comp69263_c0_seq5
161bp
 hypothetical_protein_ACD_22C00064G0001_[uncultured_bacterium]
9054 O_BomoEE1814_complete:A_BomoEE_comp32805_c0_seq2
275bp
 PREDICTED:_chromatin_modification-related_protein_MEAF6_[Amyelois_transitella]
GO:0000123 C histone acetyltransferase complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043968 P histone H2A acetylation
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0044154 P histone H3-K14 acetylation
GO:0070776 C MOZ/MORF histone acetyltransferase complex
9055 O_BomoEE18150_complete:A_BomoEE_comp69263_c0_seq5
140bp
9056 O_BomoEE18151_complete:A_BomoEE_comp69263_c0_seq5
138bp
9057 O_BomoEE18152_complete:A_BomoEE_comp69263_c0_seq5
120bp
9058 O_BomoEE18153_complete:A_BomoEE_comp69263_c0_seq5
110bp
9059 O_BomoEE18154_complete:A_BomoEE_comp69263_c0_seq5
106bp
9060 O_BomoEE18155_complete:A_BomoEE_comp69263_c0_seq5
105bp
 Uncharacterised_protein_[Streptococcus_pneumoniae]
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