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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8971 O_BomoEE18075_complete:A_BomoEE_comp69234_c0_seq3
885bp
 Vacuolar_protein_sorting,_partial_[Operophtera_brumata]
GO:0000938 C GARP complex
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006896 P Golgi to vacuole transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0007291 P sperm individualization
GO:0015031 P protein transport
GO:0019905 F syntaxin binding
GO:0030154 P cell differentiation
GO:0042147 P retrograde transport, endosome to Golgi
8972 O_BomoEE18076_3prime_partial:A_BomoEE_comp69235_c0_seq1
304bp
 PREDICTED:_uncharacterized_protein_LOC101740831_[Bombyx_mori]
8973 O_BomoEE18077_complete:A_BomoEE_comp69235_c0_seq1
150bp
8974 O_BomoEE18078_3prime_partial:A_BomoEE_comp69235_c0_seq2
491bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_[Plutella_xylostella]
8975 O_BomoEE18079_complete:A_BomoEE_comp69235_c0_seq2
150bp
8976 O_BomoEE1807_complete:A_BomoEE_comp32785_c0_seq2
252bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_4_[Papilio_machaon]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
GO:0070847 C core mediator complex
8977 O_BomoEE18080_complete:A_BomoEE_comp69237_c0_seq3
100bp
8978 O_BomoEE18081_complete:A_BomoEE_comp69237_c0_seq4
100bp
8979 O_BomoEE18082_complete:A_BomoEE_comp69239_c0_seq2
176bp
 hypothetical_protein_RR46_11573_[Papilio_xuthus]
8980 O_BomoEE18083_complete:A_BomoEE_comp69239_c0_seq3
224bp
 PREDICTED:_uncharacterized_protein_LOC106122026_[Papilio_xuthus]
8981 O_BomoEE18084_5prime_partial:A_BomoEE_comp69241_c0_seq3
226bp
 PREDICTED:_DNA_replication_complex_GINS_protein_PSF3-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
8982 O_BomoEE18085_5prime_partial:A_BomoEE_comp69244_c0_seq1
176bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_low-density_lipoprotein_receptor-related_protein_2-like_[Bombyx_mori]
8983 O_BomoEE18086_internal:A_BomoEE_comp69246_c1_seq1
142bp
8984 O_BomoEE18087_complete:A_BomoEE_comp69248_c0_seq1
614bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
8985 O_BomoEE18088_complete:A_BomoEE_comp69248_c0_seq2
319bp
 Nuclear_RNA_export_factor_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
8986 O_BomoEE18089_complete:A_BomoEE_comp69248_c0_seq2
302bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
8987 O_BomoEE1808_complete:A_BomoEE_comp32785_c0_seq2
121bp
8988 O_BomoEE18090_complete:A_BomoEE_comp69248_c0_seq4
319bp
 Nuclear_RNA_export_factor_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
8989 O_BomoEE18091_complete:A_BomoEE_comp69248_c0_seq4
268bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
8990 O_BomoEE18092_complete:A_BomoEE_comp69248_c0_seq5
351bp
 Nuclear_RNA_export_factor_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007616 P long-term memory
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0030534 P adult behavior
GO:0031965 C nuclear membrane
GO:0044822 F RNA binding
GO:0047485 F protein N-terminus binding
GO:0051028 P mRNA transport
GO:0051168 P nuclear export
8991 O_BomoEE18093_complete:A_BomoEE_comp69248_c0_seq5
268bp
 hypothetical_protein_KGM_03155_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016032 P viral process
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
8992 O_BomoEE18094_5prime_partial:A_BomoEE_comp69248_c1_seq2
295bp
 PREDICTED:_glucose-6-phosphate_1-epimerase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005975 P carbohydrate metabolic process
GO:0016853 F isomerase activity
GO:0030246 F carbohydrate binding
GO:0044262 P cellular carbohydrate metabolic process
GO:0047938 F glucose-6-phosphate 1-epimerase activity
8993 O_BomoEE18095_5prime_partial:A_BomoEE_comp69252_c0_seq1
215bp
 PREDICTED:_protein_hook_isoform_X3_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006897 P endocytosis
GO:0008017 F microtubule binding
GO:0030705 P cytoskeleton-dependent intracellular transport
8994 O_BomoEE18096_complete:A_BomoEE_comp69252_c0_seq3
682bp
 PREDICTED:_protein_hook_isoform_X3_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006897 P endocytosis
GO:0008017 F microtubule binding
GO:0030705 P cytoskeleton-dependent intracellular transport
8995 O_BomoEE18097_complete:A_BomoEE_comp69252_c0_seq4
210bp
 PREDICTED:_protein_hook_isoform_X3_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006897 P endocytosis
GO:0008017 F microtubule binding
GO:0030705 P cytoskeleton-dependent intracellular transport
8996 O_BomoEE18098_complete:A_BomoEE_comp69253_c0_seq2
299bp
 PREDICTED:_protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
8997 O_BomoEE18099_complete:A_BomoEE_comp69253_c0_seq3
299bp
 PREDICTED:_protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
8998 O_BomoEE1809_5prime_partial:A_BomoEE_comp32788_c0_seq1
330bp
 PREDICTED:_zinc_finger_MYM-type_protein_3_[Papilio_xuthus]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007010 P cytoskeleton organization
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0022604 P regulation of cell morphogenesis
GO:0046872 F metal ion binding
8999 O_BomoEE180_internal:A_BomoEE_comp2831_c0_seq1
104bp
9000 O_BomoEE18100_complete:A_BomoEE_comp69253_c0_seq4
399bp
 PREDICTED:_protein_Skeletor,_isoforms_B/C_[Bombyx_mori]
GO:0004500 F dopamine beta-monooxygenase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0006584 P catecholamine metabolic process
GO:0006997 P nucleus organization
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016363 C nuclear matrix
GO:0051225 P spindle assembly
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0055114 P obsolete oxidation-reduction process
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