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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8281 O_BomoEE17454_internal:A_BomoEE_comp68972_c0_seq5
183bp
8282 O_BomoEE17455_3prime_partial:A_BomoEE_comp68972_c0_seq6
173bp
 hypothetical_protein_KGM_13986_[Danaus_plexippus]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0007015 P actin filament organization
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0016459 C myosin complex
GO:0030048 P actin filament-based movement
GO:0030175 C filopodium
GO:0030898 F microfilament motor activity
GO:0032588 C trans-Golgi network membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0070062 C extracellular exosome
GO:0071944 C cell periphery
8283 O_BomoEE17456_5prime_partial:A_BomoEE_comp68972_c0_seq6
156bp
8284 O_BomoEE17457_5prime_partial:A_BomoEE_comp68972_c0_seq7
155bp
 hypothetical_protein_KGM_13986_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005859 C muscle myosin complex
GO:0006936 P muscle contraction
GO:0006939 P smooth muscle contraction
GO:0008307 F structural constituent of muscle
GO:0016459 C myosin complex
GO:0030241 P skeletal muscle myosin thick filament assembly
GO:0032982 C myosin filament
GO:0042470 C melanosome
GO:0048251 P elastic fiber assembly
GO:0048739 P cardiac muscle cell development
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
8285 O_BomoEE17458_3prime_partial:A_BomoEE_comp68972_c0_seq8
307bp
 hypothetical_protein_KGM_13986_[Danaus_plexippus]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005884 C actin filament
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0007015 P actin filament organization
GO:0008152 P metabolic process
GO:0010008 C endosome membrane
GO:0016459 C myosin complex
GO:0030048 P actin filament-based movement
GO:0030175 C filopodium
GO:0030898 F microfilament motor activity
GO:0032588 C trans-Golgi network membrane
GO:0048471 C perinuclear region of cytoplasm
GO:0051015 F actin filament binding
GO:0051017 P actin filament bundle assembly
GO:0070062 C extracellular exosome
GO:0071944 C cell periphery
8286 O_BomoEE17459_5prime_partial:A_BomoEE_comp68972_c0_seq8
233bp
8287 O_BomoEE1745_complete:A_BomoEE_comp32616_c0_seq1
154bp
8288 O_BomoEE17460_complete:A_BomoEE_comp68972_c0_seq8
169bp
8289 O_BomoEE17461_complete:A_BomoEE_comp68973_c0_seq1
383bp
 putative_alternative_splicing_type_3_and_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
8290 O_BomoEE17462_complete:A_BomoEE_comp68973_c0_seq1
142bp
8291 O_BomoEE17463_complete:A_BomoEE_comp68973_c0_seq2
383bp
 putative_alternative_splicing_type_3_and_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
8292 O_BomoEE17464_complete:A_BomoEE_comp68973_c0_seq2
211bp
8293 O_BomoEE17465_complete:A_BomoEE_comp68973_c0_seq2
142bp
8294 O_BomoEE17466_complete:A_BomoEE_comp68973_c0_seq3
383bp
 putative_alternative_splicing_type_3_and_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
8295 O_BomoEE17467_complete:A_BomoEE_comp68973_c0_seq3
142bp
8296 O_BomoEE17468_3prime_partial:A_BomoEE_comp68974_c0_seq1
618bp
 delta_precursor_[Bombyx_mori]
GO:0001708 P cell fate specification
GO:0001736 P establishment of planar polarity
GO:0005102 F signaling receptor binding
GO:0005112 F Notch binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0007015 P actin filament organization
GO:0007154 P cell communication
GO:0007155 P cell adhesion
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0007398 P ectoderm development
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007451 P dorsal/ventral lineage restriction, imaginal disc
GO:0007460 P R8 cell fate commitment
GO:0007464 P R3/R4 cell fate commitment
GO:0007474 P imaginal disc-derived wing vein specification
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007498 P mesoderm development
GO:0008284 P positive regulation of cell population proliferation
GO:0008347 P glial cell migration
GO:0008356 P asymmetric cell division
GO:0008407 P chaeta morphogenesis
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016318 P ommatidial rotation
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0019233 P sensory perception of pain
GO:0030139 C endocytic vesicle
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0030713 P ovarian follicle cell stalk formation
GO:0030718 P germ-line stem cell population maintenance
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0031410 C cytoplasmic vesicle
GO:0035003 C subapical complex
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035157 P negative regulation of fusion cell fate specification
GO:0036011 P imaginal disc-derived leg segmentation
GO:0042067 P establishment of ommatidial planar polarity
GO:0042676 P compound eye cone cell fate commitment
GO:0045465 P R8 cell differentiation
GO:0045468 P regulation of R8 cell spacing in compound eye
GO:0045931 P positive regulation of mitotic cell cycle
GO:0046331 P lateral inhibition
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048477 P oogenesis
GO:0048749 P compound eye development
GO:0048800 P antennal morphogenesis
GO:0048863 P stem cell differentiation
GO:0050768 P negative regulation of neurogenesis
8297 O_BomoEE17469_5prime_partial:A_BomoEE_comp68974_c0_seq1
121bp
8298 O_BomoEE1746_internal:A_BomoEE_comp32617_c0_seq1
107bp
8299 O_BomoEE17470_5prime_partial:A_BomoEE_comp68974_c0_seq1
117bp
8300 O_BomoEE17471_5prime_partial:A_BomoEE_comp68974_c0_seq1
109bp
8301 O_BomoEE17472_complete:A_BomoEE_comp68975_c0_seq1
841bp
 PREDICTED:_DNA_ligase_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
8302 O_BomoEE17473_complete:A_BomoEE_comp68975_c0_seq1
311bp
8303 O_BomoEE17474_complete:A_BomoEE_comp68975_c0_seq4
154bp
 PREDICTED:_DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
8304 O_BomoEE17475_complete:A_BomoEE_comp68975_c0_seq5
886bp
 PREDICTED:_DNA_ligase_1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
8305 O_BomoEE17476_complete:A_BomoEE_comp68975_c0_seq5
311bp
8306 O_BomoEE17477_complete:A_BomoEE_comp68975_c0_seq7
199bp
 PREDICTED:_DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0043596 C nuclear replication fork
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
GO:1903461 P Okazaki fragment processing involved in mitotic DNA replication
8307 O_BomoEE17478_complete:A_BomoEE_comp68979_c0_seq1
443bp
 PREDICTED:_YTH_domain-containing_protein_1_[Amyelois_transitella]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016604 C nuclear body
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:1990247 F N6-methyladenosine-containing RNA binding
8308 O_BomoEE17479_internal:A_BomoEE_comp68980_c0_seq1
150bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841388_[Bombyx_mori]
8309 O_BomoEE1747_internal:A_BomoEE_comp32617_c0_seq1
106bp
 PREDICTED:_serine/threonine-protein_kinase_SMG1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006950 P response to stress
GO:0007274 P neuromuscular synaptic transmission
GO:0016246 P RNA interference
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0035195 P gene silencing by miRNA
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048489 P synaptic vesicle transport
GO:0050808 P synapse organization
8310 O_BomoEE17480_3prime_partial:A_BomoEE_comp68984_c0_seq1
460bp
 PREDICTED:_scavenger_receptor_class_B_member_1_isoform_X2_[Bombyx_mori]
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
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