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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5581 O_BomoEE15023_5prime_partial:A_BomoEE_comp67986_c0_seq4
102bp
5582 O_BomoEE15024_internal:A_BomoEE_comp67986_c0_seq5
223bp
 PREDICTED:_uncharacterized_protein_LOC101745378_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0070584 P mitochondrion morphogenesis
5583 O_BomoEE15025_5prime_partial:A_BomoEE_comp67986_c0_seq5
118bp
5584 O_BomoEE15026_5prime_partial:A_BomoEE_comp67986_c0_seq5
107bp
5585 O_BomoEE15027_5prime_partial:A_BomoEE_comp67986_c0_seq5
102bp
5586 O_BomoEE15028_5prime_partial:A_BomoEE_comp67986_c0_seq6
117bp
5587 O_BomoEE15029_5prime_partial:A_BomoEE_comp67986_c0_seq6
104bp
5588 O_BomoEE1502_complete:A_BomoEE_comp32042_c0_seq1
359bp
 PREDICTED:_endophilin-A_isoform_X3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0042171 F lysophosphatidic acid acyltransferase activity
GO:0048488 P synaptic vesicle endocytosis
GO:0050803 P regulation of synapse structure or activity
5589 O_BomoEE15030_internal:A_BomoEE_comp67986_c0_seq7
196bp
 PREDICTED:_uncharacterized_protein_LOC101745378_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0070584 P mitochondrion morphogenesis
5590 O_BomoEE15031_5prime_partial:A_BomoEE_comp67986_c0_seq7
118bp
5591 O_BomoEE15032_5prime_partial:A_BomoEE_comp67986_c0_seq7
102bp
5592 O_BomoEE15033_5prime_partial:A_BomoEE_comp67986_c0_seq9
198bp
 PREDICTED:_uncharacterized_protein_LOC101745378_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022008 P neurogenesis
GO:0070584 P mitochondrion morphogenesis
5593 O_BomoEE15034_5prime_partial:A_BomoEE_comp67986_c0_seq9
130bp
5594 O_BomoEE15035_5prime_partial:A_BomoEE_comp67986_c0_seq9
118bp
5595 O_BomoEE15036_5prime_partial:A_BomoEE_comp67986_c0_seq9
102bp
5596 O_BomoEE15037_complete:A_BomoEE_comp67987_c0_seq2
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5597 O_BomoEE15038_complete:A_BomoEE_comp67987_c0_seq2
104bp
5598 O_BomoEE15039_complete:A_BomoEE_comp67987_c0_seq3
227bp
 unnamed_protein_product_[Ostreococcus_tauri]
5599 O_BomoEE1503_complete:A_BomoEE_comp32042_c0_seq2
444bp
 PREDICTED:_endophilin-A_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0042171 F lysophosphatidic acid acyltransferase activity
GO:0048488 P synaptic vesicle endocytosis
GO:0050803 P regulation of synapse structure or activity
5600 O_BomoEE15040_complete:A_BomoEE_comp67987_c0_seq3
213bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
5601 O_BomoEE15041_complete:A_BomoEE_comp67987_c0_seq4
257bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5602 O_BomoEE15042_complete:A_BomoEE_comp67987_c0_seq4
103bp
5603 O_BomoEE15043_complete:A_BomoEE_comp67987_c0_seq5
117bp
 U1_small_nuclear_ribonucleoprotein_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5604 O_BomoEE15044_complete:A_BomoEE_comp67987_c0_seq6
158bp
 hypothetical_protein_KGM_19833_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5605 O_BomoEE15045_complete:A_BomoEE_comp67987_c0_seq6
104bp
5606 O_BomoEE15046_complete:A_BomoEE_comp67987_c0_seq7
353bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_70_kDa_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
5607 O_BomoEE15047_complete:A_BomoEE_comp67987_c0_seq7
223bp
5608 O_BomoEE15048_complete:A_BomoEE_comp67987_c0_seq7
173bp
 unnamed_protein_product_[Ostreococcus_tauri]
5609 O_BomoEE15049_complete:A_BomoEE_comp67989_c1_seq2
184bp
 PREDICTED:_T-complex-associated_testis-expressed_protein_1-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
5610 O_BomoEE1504_3prime_partial:A_BomoEE_comp32047_c0_seq1
1437bp
 PREDICTED:_nuclear_pore_complex_protein_Nup153-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005813 C centrosome
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006999 P nuclear pore organization
GO:0007184 P regulation of SMAD protein signal transduction
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0017056 F structural constituent of nuclear pore
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0044613 C nuclear pore central transport channel
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
GO:0051298 P centrosome duplication
GO:0072686 C mitotic spindle
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