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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3931 O_BomoEE13539_complete:A_BomoEE_comp67086_c1_seq3
103bp
 PREDICTED:_ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
3932 O_BomoEE1353_internal:A_BomoEE_comp29536_c0_seq1
112bp
3933 O_BomoEE13540_complete:A_BomoEE_comp67086_c1_seq4
245bp
 PREDICTED:_ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
3934 O_BomoEE13541_5prime_partial:A_BomoEE_comp67086_c1_seq4
138bp
 PREDICTED:_sphingomyelin_phosphodiesterase_1-like_[Amyelois_transitella]
GO:0004767 F sphingomyelin phosphodiesterase activity
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0006685 P sphingomyelin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0044351 P macropinocytosis
GO:0046513 P ceramide biosynthetic process
GO:0046872 F metal ion binding
3935 O_BomoEE13542_5prime_partial:A_BomoEE_comp67086_c1_seq5
138bp
 PREDICTED:_sphingomyelin_phosphodiesterase_1-like_[Amyelois_transitella]
GO:0004767 F sphingomyelin phosphodiesterase activity
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0006685 P sphingomyelin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0044351 P macropinocytosis
GO:0046513 P ceramide biosynthetic process
GO:0046872 F metal ion binding
3936 O_BomoEE13543_complete:A_BomoEE_comp67086_c1_seq5
103bp
 PREDICTED:_ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
3937 O_BomoEE13544_complete:A_BomoEE_comp67086_c1_seq6
196bp
 PREDICTED:_ubiquinol-cytochrome-c_reductase_complex_assembly_factor_1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0034551 P mitochondrial respiratory chain complex III assembly
GO:0070131 P positive regulation of mitochondrial translation
3938 O_BomoEE13545_5prime_partial:A_BomoEE_comp67086_c1_seq6
138bp
 PREDICTED:_sphingomyelin_phosphodiesterase_1-like_[Amyelois_transitella]
GO:0004767 F sphingomyelin phosphodiesterase activity
GO:0005576 C extracellular region
GO:0006629 P lipid metabolic process
GO:0006685 P sphingomyelin catabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0044351 P macropinocytosis
GO:0046513 P ceramide biosynthetic process
GO:0046872 F metal ion binding
3939 O_BomoEE13546_complete:A_BomoEE_comp67087_c0_seq1
123bp
3940 O_BomoEE13547_complete:A_BomoEE_comp67087_c0_seq2
383bp
 PREDICTED:_uncharacterized_protein_LOC101739607_[Bombyx_mori]
3941 O_BomoEE13548_complete:A_BomoEE_comp67087_c0_seq2
123bp
3942 O_BomoEE13549_5prime_partial:A_BomoEE_comp67097_c1_seq1
550bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
3943 O_BomoEE1354_5prime_partial:A_BomoEE_comp29552_c0_seq1
319bp
 hypothetical_protein_RR46_03515_[Papilio_xuthus]
3944 O_BomoEE13550_5prime_partial:A_BomoEE_comp67097_c1_seq3
834bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
3945 O_BomoEE13551_complete:A_BomoEE_comp67097_c1_seq4
361bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
3946 O_BomoEE13552_5prime_partial:A_BomoEE_comp67097_c1_seq5
876bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
3947 O_BomoEE13553_5prime_partial:A_BomoEE_comp67098_c0_seq3
110bp
3948 O_BomoEE13554_complete:A_BomoEE_comp67107_c2_seq2
547bp
 laccase_2A_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0046274 P lignin catabolic process
GO:0046872 F metal ion binding
GO:0052716 F hydroquinone:oxygen oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
3949 O_BomoEE13555_complete:A_BomoEE_comp67107_c2_seq4
753bp
 laccase_2A_[Bombyx_mori]
GO:0005507 F copper ion binding
GO:0005576 C extracellular region
GO:0016491 F oxidoreductase activity
GO:0046274 P lignin catabolic process
GO:0046872 F metal ion binding
GO:0052716 F hydroquinone:oxygen oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
3950 O_BomoEE13556_complete:A_BomoEE_comp67112_c0_seq1
148bp
 PREDICTED:_deoxyuridine_5'-triphosphate_nucleotidohydrolase_[Papilio_polytes]
GO:0000287 F magnesium ion binding
GO:0001889 P liver development
GO:0004170 F dUTP diphosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006226 P dUMP biosynthetic process
GO:0009117 P nucleotide metabolic process
GO:0014070 P response to organic cyclic compound
GO:0016787 F hydrolase activity
GO:0030547 F signaling receptor inhibitor activity
GO:0032556 F pyrimidine deoxyribonucleotide binding
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0043497 P regulation of protein heterodimerization activity
GO:0046080 P dUTP metabolic process
GO:0046081 P dUTP catabolic process
GO:0046872 F metal ion binding
GO:0070207 P protein homotrimerization
GO:2000272 P negative regulation of signaling receptor activity
3951 O_BomoEE13557_complete:A_BomoEE_comp67113_c0_seq1
1195bp
 PREDICTED:_uncharacterized_protein_LOC106711256_[Papilio_machaon]
3952 O_BomoEE13558_complete:A_BomoEE_comp67113_c0_seq2
1195bp
 PREDICTED:_uncharacterized_protein_LOC106711256_[Papilio_machaon]
3953 O_BomoEE13559_3prime_partial:A_BomoEE_comp67114_c0_seq1
136bp
 PREDICTED:_PHD_finger_protein_12_[Bombyx_mori]
3954 O_BomoEE1355_3prime_partial:A_BomoEE_comp29596_c0_seq1
100bp
 PREDICTED:_uncharacterized_protein_LOC105842555_[Bombyx_mori]
3955 O_BomoEE13560_3prime_partial:A_BomoEE_comp67114_c0_seq2
136bp
 PREDICTED:_PHD_finger_protein_12_[Bombyx_mori]
3956 O_BomoEE13561_3prime_partial:A_BomoEE_comp67114_c0_seq3
207bp
 PREDICTED:_PHD_finger_protein_12_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070822 C Sin3-type complex
3957 O_BomoEE13562_complete:A_BomoEE_comp67122_c0_seq1
321bp
 PREDICTED:_elongation_factor_Tu-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
3958 O_BomoEE13563_3prime_partial:A_BomoEE_comp67122_c0_seq2
438bp
 PREDICTED:_elongation_factor_Tu-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
3959 O_BomoEE13564_complete:A_BomoEE_comp67122_c0_seq2
131bp
 hypothetical_protein_UW60_C0012G0005_[Candidatus_Woesebacteria_bacterium_GW2011_GWA2_44_33]
3960 O_BomoEE13565_complete:A_BomoEE_comp67122_c0_seq3
455bp
 PREDICTED:_elongation_factor_Tu-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0016020 C membrane
GO:0042645 C mitochondrial nucleoid
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
GO:0070125 P mitochondrial translational elongation
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