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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3721 O_BomoEE1334_complete:A_BomoEE_comp29080_c0_seq1
108bp
3722 O_BomoEE13350_5prime_partial:A_BomoEE_comp66896_c0_seq4
149bp
 PREDICTED:_Kv_channel-interacting_protein_1,_partial_[Bombyx_mori]
GO:0005244 F voltage-gated ion channel activity
GO:0005267 F potassium channel activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0008076 C voltage-gated potassium channel complex
GO:0008150 P biological_process
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0030425 C dendrite
GO:0034765 P regulation of ion transmembrane transport
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0071805 P potassium ion transmembrane transport
GO:0072659 P protein localization to plasma membrane
GO:1901379 P regulation of potassium ion transmembrane transport
3723 O_BomoEE13351_complete:A_BomoEE_comp66896_c0_seq5
150bp
 PREDICTED:_Kv_channel-interacting_protein_1,_partial_[Bombyx_mori]
GO:0005244 F voltage-gated ion channel activity
GO:0005267 F potassium channel activity
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0008076 C voltage-gated potassium channel complex
GO:0015459 F potassium channel regulator activity
GO:0016020 C membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0046872 F metal ion binding
GO:0071805 P potassium ion transmembrane transport
GO:0072659 P protein localization to plasma membrane
GO:1901379 P regulation of potassium ion transmembrane transport
3724 O_BomoEE13352_complete:A_BomoEE_comp66897_c0_seq1
107bp
3725 O_BomoEE13353_complete:A_BomoEE_comp66898_c0_seq1
101bp
3726 O_BomoEE13354_5prime_partial:A_BomoEE_comp66898_c0_seq2
105bp
 PREDICTED:_PHD_finger_protein_12-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3727 O_BomoEE13355_complete:A_BomoEE_comp66898_c0_seq2
103bp
3728 O_BomoEE13356_3prime_partial:A_BomoEE_comp66898_c0_seq3
175bp
 PREDICTED:_PHD_finger_protein_12_[Papilio_machaon]
3729 O_BomoEE13357_complete:A_BomoEE_comp66898_c0_seq3
101bp
3730 O_BomoEE13358_3prime_partial:A_BomoEE_comp66898_c0_seq4
175bp
 PREDICTED:_PHD_finger_protein_12_[Papilio_machaon]
3731 O_BomoEE13359_5prime_partial:A_BomoEE_comp66898_c0_seq4
105bp
 PREDICTED:_PHD_finger_protein_12-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3732 O_BomoEE1335_5prime_partial:A_BomoEE_comp29165_c0_seq1
166bp
 PREDICTED:_uncharacterized_protein_LOC106133041_[Amyelois_transitella]
3733 O_BomoEE13360_complete:A_BomoEE_comp66898_c0_seq4
103bp
3734 O_BomoEE13361_internal:A_BomoEE_comp66898_c0_seq5
294bp
 PREDICTED:_uncharacterized_protein_LOC106133203_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3735 O_BomoEE13362_3prime_partial:A_BomoEE_comp66898_c0_seq6
175bp
 PREDICTED:_PHD_finger_protein_12_[Papilio_machaon]
3736 O_BomoEE13363_3prime_partial:A_BomoEE_comp66898_c0_seq7
245bp
 PREDICTED:_uncharacterized_protein_LOC106133203_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0001222 F transcription corepressor binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016580 C Sin3 complex
GO:0017053 C transcription repressor complex
GO:0035091 F phosphatidylinositol binding
GO:0042393 F histone binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3737 O_BomoEE13364_5prime_partial:A_BomoEE_comp66899_c0_seq1
374bp
 PREDICTED:_uncharacterized_protein_LOC101739352_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007416 P synapse assembly
GO:0007611 P learning or memory
GO:0007613 P memory
GO:0007616 P long-term memory
GO:0008345 P larval locomotory behavior
GO:0008355 P olfactory learning
GO:0040011 P locomotion
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048813 P dendrite morphogenesis
GO:0050773 P regulation of dendrite development
3738 O_BomoEE13365_complete:A_BomoEE_comp66901_c0_seq1
223bp
 PREDICTED:_uncharacterized_protein_LOC105841531_isoform_X2_[Bombyx_mori]
3739 O_BomoEE13366_complete:A_BomoEE_comp66901_c0_seq2
229bp
 PREDICTED:_uncharacterized_protein_LOC105841531_isoform_X1_[Bombyx_mori]
3740 O_BomoEE13367_complete:A_BomoEE_comp66901_c0_seq2
112bp
3741 O_BomoEE13368_complete:A_BomoEE_comp66901_c0_seq4
176bp
 PREDICTED:_uncharacterized_protein_LOC105841531_isoform_X2_[Bombyx_mori]
3742 O_BomoEE13369_complete:A_BomoEE_comp66904_c1_seq1
136bp
3743 O_BomoEE1336_complete:A_BomoEE_comp29207_c0_seq2
262bp
 PREDICTED:_ras-related_protein_Rab-37_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
3744 O_BomoEE13370_complete:A_BomoEE_comp66915_c0_seq1
230bp
 PREDICTED:_AN1-type_zinc_finger_protein_2A-like_[Papilio_polytes]
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0006616 P SRP-dependent cotranslational protein targeting to membrane, translocation
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
3745 O_BomoEE13371_complete:A_BomoEE_comp66915_c0_seq1
104bp
3746 O_BomoEE13372_complete:A_BomoEE_comp66915_c0_seq1
102bp
3747 O_BomoEE13373_5prime_partial:A_BomoEE_comp66918_c0_seq1
147bp
 PREDICTED:_ferritin,_heavy_subunit-like_[Plutella_xylostella]
GO:0004322 F ferroxidase activity
GO:0005623 C obsolete cell
GO:0006826 P iron ion transport
GO:0006879 P cellular iron ion homeostasis
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
3748 O_BomoEE13374_5prime_partial:A_BomoEE_comp66918_c1_seq1
264bp
 PREDICTED:_Bardet-Biedl_syndrome_7_protein_homolog_[Bombyx_mori]
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001654 P eye development
GO:0001750 C photoreceptor outer segment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0007224 P smoothened signaling pathway
GO:0007420 P brain development
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034464 C BBSome
GO:0035058 P non-motile cilium assembly
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045444 P fat cell differentiation
GO:0046907 P intracellular transport
GO:0060021 P roof of mouth development
GO:0060170 C ciliary membrane
GO:0060173 P limb development
3749 O_BomoEE13375_complete:A_BomoEE_comp66918_c1_seq2
204bp
 PREDICTED:_Bardet-Biedl_syndrome_7_protein_homolog_[Bombyx_mori]
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001654 P eye development
GO:0001750 C photoreceptor outer segment
GO:0001947 P heart looping
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0007224 P smoothened signaling pathway
GO:0007368 P determination of left/right symmetry
GO:0007420 P brain development
GO:0007507 P heart development
GO:0007601 P visual perception
GO:0008104 P protein localization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0032402 P melanosome transport
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034464 C BBSome
GO:0035058 P non-motile cilium assembly
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045444 P fat cell differentiation
GO:0046907 P intracellular transport
GO:0048546 P digestive tract morphogenesis
GO:0050896 P response to stimulus
GO:0051877 P pigment granule aggregation in cell center
GO:0060021 P roof of mouth development
GO:0060170 C ciliary membrane
GO:0060173 P limb development
GO:0060271 P cilium assembly
3750 O_BomoEE13376_5prime_partial:A_BomoEE_comp66918_c1_seq5
390bp
 PREDICTED:_Bardet-Biedl_syndrome_7_protein_homolog_[Bombyx_mori]
GO:0001103 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001654 P eye development
GO:0001750 C photoreceptor outer segment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006810 P transport
GO:0007224 P smoothened signaling pathway
GO:0007420 P brain development
GO:0007507 P heart development
GO:0008104 P protein localization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034464 C BBSome
GO:0035058 P non-motile cilium assembly
GO:0036064 C ciliary basal body
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045444 P fat cell differentiation
GO:0046907 P intracellular transport
GO:0060021 P roof of mouth development
GO:0060170 C ciliary membrane
GO:0060173 P limb development
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