SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2671 O_BomoEE12404_internal:A_BomoEE_comp65935_c0_seq1
149bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Bombyx_mori]
2672 O_BomoEE12405_5prime_partial:A_BomoEE_comp65935_c0_seq1
111bp
2673 O_BomoEE12406_5prime_partial:A_BomoEE_comp65935_c0_seq4
147bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Bombyx_mori]
2674 O_BomoEE12407_5prime_partial:A_BomoEE_comp65935_c0_seq4
111bp
2675 O_BomoEE12408_5prime_partial:A_BomoEE_comp65938_c0_seq1
156bp
 PB1_[Wuhan_Mosquito_Virus_7]
GO:0000166 F nucleotide binding
GO:0001172 P transcription, RNA-templated
GO:0003968 F RNA-directed 5'-3' RNA polymerase activity
GO:0006351 P transcription, DNA-templated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0039694 P viral RNA genome replication
2676 O_BomoEE12409_complete:A_BomoEE_comp65938_c0_seq1
123bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2677 O_BomoEE1240_5prime_partial:A_BomoEE_comp27585_c0_seq1
215bp
2678 O_BomoEE12410_3prime_partial:A_BomoEE_comp65938_c0_seq1
113bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
2679 O_BomoEE12411_complete:A_BomoEE_comp65939_c0_seq1
506bp
 PREDICTED:_non-lysosomal_glucosylceramidase-like_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
2680 O_BomoEE12412_3prime_partial:A_BomoEE_comp65939_c0_seq1
123bp
 PREDICTED:_non-lysosomal_glucosylceramidase-like_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
2681 O_BomoEE12413_3prime_partial:A_BomoEE_comp65939_c0_seq2
627bp
 PREDICTED:_non-lysosomal_glucosylceramidase-like_isoform_X2_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004348 F glucosylceramidase activity
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0008152 P metabolic process
GO:0008206 P bile acid metabolic process
GO:0008422 F beta-glucosidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016139 P glycoside catabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
2682 O_BomoEE12414_complete:A_BomoEE_comp65948_c0_seq1
357bp
 PREDICTED:_uncharacterized_protein_LOC101744325_[Bombyx_mori]
2683 O_BomoEE12415_complete:A_BomoEE_comp65948_c0_seq1
198bp
2684 O_BomoEE12416_complete:A_BomoEE_comp65948_c0_seq2
112bp
 PREDICTED:_uncharacterized_protein_LOC101744325_[Bombyx_mori]
2685 O_BomoEE12417_complete:A_BomoEE_comp65949_c0_seq1
2774bp
 PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
2686 O_BomoEE12418_complete:A_BomoEE_comp65949_c0_seq1
172bp
2687 O_BomoEE12419_complete:A_BomoEE_comp65949_c0_seq1
135bp
2688 O_BomoEE1241_5prime_partial:A_BomoEE_comp27585_c0_seq2
299bp
 hypothetical_protein_KGM_13188_[Danaus_plexippus]
2689 O_BomoEE12420_complete:A_BomoEE_comp65949_c0_seq1
102bp
2690 O_BomoEE12421_complete:A_BomoEE_comp65949_c0_seq2
987bp
 PREDICTED:_small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
2691 O_BomoEE12422_complete:A_BomoEE_comp65949_c0_seq2
172bp
2692 O_BomoEE12423_complete:A_BomoEE_comp65949_c0_seq2
158bp
2693 O_BomoEE12424_complete:A_BomoEE_comp65950_c0_seq1
446bp
 PREDICTED:_zinc_finger_protein_ZIC_4_[Amyelois_transitella]
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007365 P periodic partitioning
GO:0007366 P periodic partitioning by pair rule gene
GO:0007455 P eye-antennal disc morphogenesis
GO:0007494 P midgut development
GO:0008101 P BMP signaling pathway
GO:0008354 P germ cell migration
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
2694 O_BomoEE12425_complete:A_BomoEE_comp65950_c0_seq1
104bp
2695 O_BomoEE12426_complete:A_BomoEE_comp65951_c0_seq1
2064bp
 PREDICTED:_dedicator_of_cytokinesis_protein_9_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
2696 O_BomoEE12427_complete:A_BomoEE_comp65951_c0_seq1
124bp
2697 O_BomoEE12428_complete:A_BomoEE_comp65951_c0_seq2
1071bp
 PREDICTED:_dedicator_of_cytokinesis_protein_9_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0007264 P small GTPase mediated signal transduction
GO:0007596 P blood coagulation
GO:0008150 P biological_process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0043547 P positive regulation of GTPase activity
2698 O_BomoEE12429_complete:A_BomoEE_comp65951_c0_seq2
1017bp
 PREDICTED:_dedicator_of_cytokinesis_protein_9_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005622 C intracellular anatomical structure
GO:0007264 P small GTPase mediated signal transduction
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0017048 F small GTPase binding
GO:0043547 P positive regulation of GTPase activity
2699 O_BomoEE1242_complete:A_BomoEE_comp27585_c0_seq2
284bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_facilitated_trehalose_transporter_Tret1-2_homolog_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
2700 O_BomoEE12430_complete:A_BomoEE_comp65951_c0_seq2
124bp
previous next from show/95730

- SilkBase 1999-2023 -