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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2251 O_BomoEE12026_3prime_partial:A_BomoEE_comp65633_c0_seq2
266bp
 PREDICTED:_pre-mRNA_cleavage_complex_2_protein_Pcf11-like_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000993 F RNA polymerase II complex binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005849 C mRNA cleavage factor complex
GO:0006369 P termination of RNA polymerase II transcription
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
2252 O_BomoEE12027_5prime_partial:A_BomoEE_comp65633_c0_seq2
193bp
2253 O_BomoEE12028_complete:A_BomoEE_comp65633_c0_seq2
106bp
2254 O_BomoEE12029_5prime_partial:A_BomoEE_comp65633_c0_seq3
193bp
2255 O_BomoEE1202_complete:A_BomoEE_comp26821_c0_seq1
211bp
 cuticular_protein_hypothetical_30_precursor_[Bombyx_mori]
GO:0042302 F structural constituent of cuticle
2256 O_BomoEE12030_3prime_partial:A_BomoEE_comp65633_c0_seq3
181bp
 PREDICTED:_pre-mRNA_cleavage_complex_2_protein_Pcf11-like_isoform_X2_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000993 F RNA polymerase II complex binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005849 C mRNA cleavage factor complex
GO:0006369 P termination of RNA polymerase II transcription
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
2257 O_BomoEE12031_complete:A_BomoEE_comp65633_c0_seq3
108bp
2258 O_BomoEE12032_5prime_partial:A_BomoEE_comp65633_c0_seq4
201bp
2259 O_BomoEE12033_3prime_partial:A_BomoEE_comp65633_c0_seq4
189bp
 PREDICTED:_pre-mRNA_cleavage_complex_2_protein_Pcf11-like_isoform_X1_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000993 F RNA polymerase II complex binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005849 C mRNA cleavage factor complex
GO:0006369 P termination of RNA polymerase II transcription
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
2260 O_BomoEE12034_complete:A_BomoEE_comp65633_c0_seq4
108bp
2261 O_BomoEE12035_complete:A_BomoEE_comp65635_c0_seq1
573bp
 PREDICTED:_glutamate_receptor_ionotropic,_kainate_2_[Amyelois_transitella]
GO:0001662 P behavioral fear response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0007215 P glutamate receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0008066 F glutamate receptor activity
GO:0008328 C ionotropic glutamate receptor complex
GO:0014069 C postsynaptic density
GO:0015276 F ligand-gated ion channel activity
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019228 P neuronal action potential
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032839 C dendrite cytoplasm
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043113 P receptor clustering
GO:0043195 C terminal bouton
GO:0043204 C perikaryon
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046328 P regulation of JNK cascade
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050804 P modulation of chemical synaptic transmission
GO:0050806 P positive regulation of synaptic transmission
GO:0051402 P neuron apoptotic process
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
2262 O_BomoEE12036_complete:A_BomoEE_comp65635_c0_seq1
112bp
2263 O_BomoEE12037_complete:A_BomoEE_comp65635_c0_seq1
105bp
 hypothetical_protein_ALC53_02229,_partial_[Atta_colombica]
2264 O_BomoEE12038_3prime_partial:A_BomoEE_comp65635_c0_seq2
276bp
 PREDICTED:_glutamate_receptor_ionotropic,_kainate_2-like,_partial_[Papilio_polytes]
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008328 C ionotropic glutamate receptor complex
GO:0014054 P positive regulation of gamma-aminobutyric acid secretion
GO:0014069 C postsynaptic density
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030425 C dendrite
GO:0030534 P adult behavior
GO:0032230 P positive regulation of synaptic transmission, GABAergic
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0048266 P behavioral response to pain
GO:0051899 P membrane depolarization
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
GO:0097481 C postsynaptic density
2265 O_BomoEE12039_5prime_partial:A_BomoEE_comp65635_c0_seq3
626bp
 PREDICTED:_glutamate_receptor_ionotropic,_kainate_2_[Amyelois_transitella]
GO:0001662 P behavioral fear response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0007215 P glutamate receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0008066 F glutamate receptor activity
GO:0008328 C ionotropic glutamate receptor complex
GO:0014069 C postsynaptic density
GO:0015276 F ligand-gated ion channel activity
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019228 P neuronal action potential
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032839 C dendrite cytoplasm
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043113 P receptor clustering
GO:0043195 C terminal bouton
GO:0043204 C perikaryon
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046328 P regulation of JNK cascade
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050804 P modulation of chemical synaptic transmission
GO:0050806 P positive regulation of synaptic transmission
GO:0051402 P neuron apoptotic process
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
2266 O_BomoEE1203_5prime_partial:A_BomoEE_comp26821_c0_seq1
130bp
2267 O_BomoEE12040_5prime_partial:A_BomoEE_comp65635_c0_seq3
176bp
2268 O_BomoEE12041_complete:A_BomoEE_comp65635_c0_seq3
112bp
2269 O_BomoEE12042_5prime_partial:A_BomoEE_comp65635_c0_seq3
111bp
2270 O_BomoEE12043_5prime_partial:A_BomoEE_comp65635_c0_seq3
109bp
2271 O_BomoEE12044_complete:A_BomoEE_comp65635_c0_seq3
105bp
 hypothetical_protein_ALC53_02229,_partial_[Atta_colombica]
2272 O_BomoEE12045_complete:A_BomoEE_comp65635_c0_seq4
585bp
 PREDICTED:_glutamate_receptor_ionotropic,_kainate_2_[Amyelois_transitella]
GO:0001662 P behavioral fear response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006886 P intracellular protein transport
GO:0007165 P signal transduction
GO:0007215 P glutamate receptor signaling pathway
GO:0007268 P chemical synaptic transmission
GO:0008066 F glutamate receptor activity
GO:0008328 C ionotropic glutamate receptor complex
GO:0014069 C postsynaptic density
GO:0015276 F ligand-gated ion channel activity
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019228 P neuronal action potential
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032839 C dendrite cytoplasm
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043113 P receptor clustering
GO:0043195 C terminal bouton
GO:0043204 C perikaryon
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046328 P regulation of JNK cascade
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050804 P modulation of chemical synaptic transmission
GO:0050806 P positive regulation of synaptic transmission
GO:0051402 P neuron apoptotic process
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
2273 O_BomoEE12046_5prime_partial:A_BomoEE_comp65635_c0_seq4
176bp
2274 O_BomoEE12047_complete:A_BomoEE_comp65635_c0_seq4
112bp
2275 O_BomoEE12048_5prime_partial:A_BomoEE_comp65635_c0_seq4
111bp
2276 O_BomoEE12049_5prime_partial:A_BomoEE_comp65635_c0_seq4
109bp
2277 O_BomoEE1204_complete:A_BomoEE_comp26824_c0_seq1
463bp
 PREDICTED:_tubulin-specific_chaperone_cofactor_E-like_protein_isoform_X2_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
2278 O_BomoEE12050_complete:A_BomoEE_comp65635_c0_seq4
105bp
 hypothetical_protein_ALC53_02229,_partial_[Atta_colombica]
2279 O_BomoEE12051_5prime_partial:A_BomoEE_comp65635_c0_seq5
614bp
 PREDICTED:_glutamate_receptor_ionotropic,_kainate_2_[Amyelois_transitella]
GO:0001662 P behavioral fear response
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006886 P intracellular protein transport
GO:0007268 P chemical synaptic transmission
GO:0008066 F glutamate receptor activity
GO:0008328 C ionotropic glutamate receptor complex
GO:0014069 C postsynaptic density
GO:0015277 F kainate selective glutamate receptor activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019228 P neuronal action potential
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0030424 C axon
GO:0030425 C dendrite
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032839 C dendrite cytoplasm
GO:0032983 C kainate selective glutamate receptor complex
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0035249 P synaptic transmission, glutamatergic
GO:0042391 P regulation of membrane potential
GO:0042734 C presynaptic membrane
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043025 C neuronal cell body
GO:0043113 P receptor clustering
GO:0043195 C terminal bouton
GO:0043204 C perikaryon
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0046328 P regulation of JNK cascade
GO:0048169 P regulation of long-term neuronal synaptic plasticity
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050804 P modulation of chemical synaptic transmission
GO:0050806 P positive regulation of synaptic transmission
GO:0051402 P neuron apoptotic process
GO:0051967 P negative regulation of synaptic transmission, glutamatergic
GO:0060079 P excitatory postsynaptic potential
GO:0060080 P inhibitory postsynaptic potential
2280 O_BomoEE12052_complete:A_BomoEE_comp65635_c0_seq5
112bp
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