SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/95730
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
13381 O_BomoEE22043_internal:A_BomoEE_comp70332_c2_seq1
114bp
13382 O_BomoEE22044_complete:A_BomoEE_comp70333_c0_seq1
538bp
 PREDICTED:_sodium-coupled_neutral_amino_acid_transporter_9-like_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
13383 O_BomoEE22045_complete:A_BomoEE_comp70333_c0_seq2
404bp
 PREDICTED:_sodium-coupled_neutral_amino_acid_transporter_9-like_[Bombyx_mori]
GO:0003333 P amino acid transmembrane transport
GO:0005783 C endoplasmic reticulum
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015171 F amino acid transmembrane transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
13384 O_BomoEE22046_complete:A_BomoEE_comp70335_c0_seq1
396bp
 PREDICTED:_insulin_gene_enhancer_protein_ISL-1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001102 F RNA polymerase II-specific DNA-binding transcription factor binding
GO:0001105 F transcription coactivator activity
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001755 P neural crest cell migration
GO:0003007 P heart morphogenesis
GO:0003139 P secondary heart field specification
GO:0003148 P outflow tract septum morphogenesis
GO:0003151 P outflow tract morphogenesis
GO:0003203 P endocardial cushion morphogenesis
GO:0003215 P cardiac right ventricle morphogenesis
GO:0003266 P regulation of secondary heart field cardioblast proliferation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007507 P heart development
GO:0008270 F zinc ion binding
GO:0008284 P positive regulation of cell population proliferation
GO:0010468 P regulation of gene expression
GO:0010575 P positive regulation of vascular endothelial growth factor production
GO:0016922 F nuclear receptor binding
GO:0021520 P spinal cord motor neuron cell fate specification
GO:0021522 P spinal cord motor neuron differentiation
GO:0021524 P visceral motor neuron differentiation
GO:0021559 P trigeminal nerve development
GO:0021983 P pituitary gland development
GO:0030182 P neuron differentiation
GO:0030331 F estrogen receptor binding
GO:0031016 P pancreas development
GO:0031103 P axon regeneration
GO:0031290 P retinal ganglion cell axon guidance
GO:0032024 P positive regulation of insulin secretion
GO:0032725 P positive regulation of granulocyte macrophage colony-stimulating factor production
GO:0032729 P positive regulation of interferon-gamma production
GO:0032730 P positive regulation of interleukin-1 alpha production
GO:0032731 P positive regulation of interleukin-1 beta production
GO:0032735 P positive regulation of interleukin-12 production
GO:0032755 P positive regulation of interleukin-6 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0035066 P positive regulation of histone acetylation
GO:0042517 P positive regulation of tyrosine phosphorylation of STAT protein
GO:0043388 P positive regulation of DNA binding
GO:0043425 F bHLH transcription factor binding
GO:0043524 P negative regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0045766 P positive regulation of angiogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048663 P neuron fate commitment
GO:0048665 P neuron fate specification
GO:0048762 P mesenchymal cell differentiation
GO:0048880 P sensory system development
GO:0048935 P peripheral nervous system neuron development
GO:0048936 P peripheral nervous system neuron axonogenesis
GO:0050728 P negative regulation of inflammatory response
GO:0055010 P ventricular cardiac muscle tissue morphogenesis
GO:0060037 P pharyngeal system development
GO:0060379 P cardiac muscle cell myoblast differentiation
GO:0060384 P innervation
GO:0060413 P atrial septum morphogenesis
GO:0060913 P cardiac cell fate determination
GO:0071385 P cellular response to glucocorticoid stimulus
GO:0071657 P positive regulation of granulocyte colony-stimulating factor production
GO:0090074 P negative regulation of protein homodimerization activity
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:1901258 P positive regulation of macrophage colony-stimulating factor production
13385 O_BomoEE22047_complete:A_BomoEE_comp70336_c0_seq2
219bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0008152 P metabolic process
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0016740 F transferase activity
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13386 O_BomoEE22048_complete:A_BomoEE_comp70336_c0_seq2
122bp
13387 O_BomoEE22049_complete:A_BomoEE_comp70336_c0_seq3
339bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016740 F transferase activity
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0034644 P cellular response to UV
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13388 O_BomoEE2204_complete:A_BomoEE_comp33658_c0_seq1
119bp
 PREDICTED:_uncharacterized_protein_LOC106134290_[Amyelois_transitella]
13389 O_BomoEE22050_complete:A_BomoEE_comp70336_c0_seq3
122bp
13390 O_BomoEE22051_complete:A_BomoEE_comp70336_c0_seq5
212bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0008152 P metabolic process
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0016740 F transferase activity
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13391 O_BomoEE22052_complete:A_BomoEE_comp70336_c0_seq5
115bp
13392 O_BomoEE22053_complete:A_BomoEE_comp70336_c0_seq6
332bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016740 F transferase activity
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0034644 P cellular response to UV
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13393 O_BomoEE22054_complete:A_BomoEE_comp70336_c0_seq6
115bp
13394 O_BomoEE22055_5prime_partial:A_BomoEE_comp70336_c0_seq7
427bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016740 F transferase activity
GO:0042802 F identical protein binding
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13395 O_BomoEE22056_complete:A_BomoEE_comp70336_c0_seq7
115bp
13396 O_BomoEE22057_5prime_partial:A_BomoEE_comp70336_c0_seq8
434bp
 branched-chain-amino-acid_transaminase_[Spodoptera_litura]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0003824 F catalytic activity
GO:0004084 F branched-chain-amino-acid transaminase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0008483 F transaminase activity
GO:0008652 P cellular amino acid biosynthetic process
GO:0009081 P branched-chain amino acid metabolic process
GO:0009082 P branched-chain amino acid biosynthetic process
GO:0009083 P branched-chain amino acid catabolic process
GO:0016740 F transferase activity
GO:0042802 F identical protein binding
GO:0052654 F L-leucine transaminase activity
GO:0052655 F L-valine transaminase activity
GO:0052656 F L-isoleucine transaminase activity
13397 O_BomoEE22058_complete:A_BomoEE_comp70336_c0_seq8
122bp
13398 O_BomoEE22059_5prime_partial:A_BomoEE_comp70339_c0_seq1
247bp
 PREDICTED:_pancreatic_triacylglycerol_lipase-like_isoform_X3_[Papilio_xuthus]
GO:0004806 F triglyceride lipase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006629 P lipid metabolic process
GO:0009791 P post-embryonic development
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0033993 P response to lipid
GO:0043434 P response to peptide hormone
GO:0046872 F metal ion binding
GO:0052689 F carboxylic ester hydrolase activity
13399 O_BomoEE2205_complete:A_BomoEE_comp33658_c0_seq2
119bp
 PREDICTED:_uncharacterized_protein_LOC106134290_[Amyelois_transitella]
13400 O_BomoEE22060_5prime_partial:A_BomoEE_comp70339_c0_seq4
247bp
 PREDICTED:_pancreatic_triacylglycerol_lipase-like_isoform_X3_[Papilio_xuthus]
GO:0004806 F triglyceride lipase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006629 P lipid metabolic process
GO:0009791 P post-embryonic development
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0033993 P response to lipid
GO:0043434 P response to peptide hormone
GO:0046872 F metal ion binding
GO:0052689 F carboxylic ester hydrolase activity
13401 O_BomoEE22061_5prime_partial:A_BomoEE_comp70339_c0_seq5
281bp
 PREDICTED:_pancreatic_triacylglycerol_lipase-like_[Amyelois_transitella]
GO:0004806 F triglyceride lipase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006629 P lipid metabolic process
GO:0009791 P post-embryonic development
GO:0016042 P lipid catabolic process
GO:0016298 F lipase activity
GO:0016787 F hydrolase activity
GO:0033993 P response to lipid
GO:0043434 P response to peptide hormone
GO:0046872 F metal ion binding
GO:0052689 F carboxylic ester hydrolase activity
13402 O_BomoEE22062_complete:A_BomoEE_comp70340_c0_seq1
1699bp
 PREDICTED:_uncharacterized_protein_LOC101739573_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0042393 F histone binding
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051491 P positive regulation of filopodium assembly
GO:0060999 P positive regulation of dendritic spine development
GO:0070491 F DNA-binding transcription factor binding
GO:0098815 P modulation of excitatory postsynaptic potential
GO:1902897 P regulation of postsynaptic density protein 95 clustering
GO:1902952 P positive regulation of dendritic spine maintenance
13403 O_BomoEE22063_complete:A_BomoEE_comp70340_c0_seq1
384bp
13404 O_BomoEE22064_complete:A_BomoEE_comp70340_c0_seq1
140bp
13405 O_BomoEE22065_complete:A_BomoEE_comp70340_c0_seq1
115bp
13406 O_BomoEE22066_complete:A_BomoEE_comp70340_c0_seq1
101bp
13407 O_BomoEE22067_complete:A_BomoEE_comp70340_c0_seq1
101bp
13408 O_BomoEE22068_complete:A_BomoEE_comp70340_c0_seq2
1668bp
 PREDICTED:_uncharacterized_protein_LOC101739573_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001106 F transcription corepressor activity
GO:0003682 F chromatin binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0042393 F histone binding
GO:0043197 C dendritic spine
GO:0043198 C dendritic shaft
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051491 P positive regulation of filopodium assembly
GO:0060999 P positive regulation of dendritic spine development
GO:0070491 F DNA-binding transcription factor binding
GO:0098815 P modulation of excitatory postsynaptic potential
GO:1902897 P regulation of postsynaptic density protein 95 clustering
GO:1902952 P positive regulation of dendritic spine maintenance
13409 O_BomoEE22069_complete:A_BomoEE_comp70340_c0_seq2
384bp
13410 O_BomoEE2206_complete:A_BomoEE_comp33659_c0_seq1
457bp
 PREDICTED:_dual_specificity_protein_kinase_CLK2_isoform_X6_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001964 P startle response
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004712 F protein serine/threonine/tyrosine kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006468 P protein phosphorylation
GO:0007275 P multicellular organism development
GO:0007350 P blastoderm segmentation
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007548 P sex differentiation
GO:0007601 P visual perception
GO:0008362 P chitin-based embryonic cuticle biosynthetic process
GO:0008407 P chaeta morphogenesis
GO:0009306 P protein secretion
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0030717 P oocyte karyosome formation
GO:0031987 P locomotion involved in locomotory behavior
GO:0034125 P negative regulation of MyD88-dependent toll-like receptor signaling pathway
GO:0035071 P salivary gland cell autophagic cell death
GO:0042051 P compound eye photoreceptor development
GO:0045494 P photoreceptor cell maintenance
GO:0046777 P protein autophosphorylation
GO:0048102 P autophagic cell death
GO:0048477 P oogenesis
GO:0048749 P compound eye development
GO:0048854 P brain morphogenesis
GO:0050896 P response to stimulus
GO:2000255 P negative regulation of male germ cell proliferation
previous next from show/95730

- SilkBase 1999-2023 -