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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
12091 O_BomoEE20883_complete:A_BomoEE_comp70091_c0_seq7
107bp
 putative_MFS-type_transporter_C19orf28_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12092 O_BomoEE20884_complete:A_BomoEE_comp70091_c0_seq8
405bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X2_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12093 O_BomoEE20885_complete:A_BomoEE_comp70091_c0_seq9
269bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X2_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12094 O_BomoEE20886_complete:A_BomoEE_comp70091_c0_seq9
207bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_12-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
12095 O_BomoEE20887_complete:A_BomoEE_comp70092_c0_seq1
136bp
 PREDICTED:_SWI/SNF_complex_subunit_SMARCC1-like_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
12096 O_BomoEE20888_3prime_partial:A_BomoEE_comp70092_c0_seq2
736bp
 PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
12097 O_BomoEE20889_complete:A_BomoEE_comp70092_c0_seq2
139bp
12098 O_BomoEE2088_complete:A_BomoEE_comp33470_c0_seq1
469bp
 PREDICTED:_uncharacterized_protein_LOC101746308_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0043035 F chromatin insulator sequence binding
GO:0043565 F sequence-specific DNA binding
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
12099 O_BomoEE20890_complete:A_BomoEE_comp70092_c0_seq2
108bp
12100 O_BomoEE20891_3prime_partial:A_BomoEE_comp70092_c0_seq3
636bp
 PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
12101 O_BomoEE20892_complete:A_BomoEE_comp70092_c0_seq3
139bp
12102 O_BomoEE20893_5prime_partial:A_BomoEE_comp70092_c0_seq3
100bp
12103 O_BomoEE20894_complete:A_BomoEE_comp70093_c0_seq1
1121bp
 PREDICTED:_nucleolar_protein_6_[Amyelois_transitella]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
12104 O_BomoEE20895_complete:A_BomoEE_comp70093_c0_seq1
145bp
12105 O_BomoEE20896_complete:A_BomoEE_comp70093_c0_seq1
112bp
12106 O_BomoEE20897_complete:A_BomoEE_comp70093_c1_seq1
587bp
 PREDICTED:_guanine_nucleotide-binding_protein-like_3_homolog_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001652 C granular component
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0009267 P cellular response to starvation
GO:0016887 F ATP hydrolysis activity
GO:0040014 P regulation of multicellular organism growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0042127 P regulation of cell population proliferation
GO:0042273 P ribosomal large subunit biogenesis
GO:0046626 P regulation of insulin receptor signaling pathway
GO:0090307 P mitotic spindle assembly
12107 O_BomoEE20898_complete:A_BomoEE_comp70094_c0_seq1
550bp
 zerknullt_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 P angiogenesis
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0009952 P anterior/posterior pattern specification
GO:0021546 P rhombomere development
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0030878 P thyroid gland development
GO:0043565 F sequence-specific DNA binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0051216 P cartilage development
GO:0060216 P definitive hemopoiesis
GO:0060324 P face development
12108 O_BomoEE20899_complete:A_BomoEE_comp70094_c0_seq2
311bp
 zerknullt_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 P angiogenesis
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0009952 P anterior/posterior pattern specification
GO:0021546 P rhombomere development
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0030878 P thyroid gland development
GO:0043565 F sequence-specific DNA binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0051216 P cartilage development
GO:0060216 P definitive hemopoiesis
GO:0060324 P face development
12109 O_BomoEE2089_complete:A_BomoEE_comp33471_c0_seq1
140bp
 PREDICTED:_uncharacterized_protein_LOC105386977_[Plutella_xylostella]
12110 O_BomoEE208_5prime_partial:A_BomoEE_comp3168_c1_seq1
107bp
12111 O_BomoEE20900_complete:A_BomoEE_comp70094_c0_seq2
240bp
 zerknullt_[Bombyx_mori]
12112 O_BomoEE20901_complete:A_BomoEE_comp70094_c0_seq3
311bp
 zerknullt_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 P angiogenesis
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0009952 P anterior/posterior pattern specification
GO:0021546 P rhombomere development
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0030878 P thyroid gland development
GO:0043565 F sequence-specific DNA binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0051216 P cartilage development
GO:0060216 P definitive hemopoiesis
GO:0060324 P face development
12113 O_BomoEE20902_complete:A_BomoEE_comp70094_c0_seq3
302bp
 _Hox_cluster_protein_Shx15_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
12114 O_BomoEE20903_complete:A_BomoEE_comp70094_c0_seq3
240bp
 zerknullt_[Bombyx_mori]
12115 O_BomoEE20904_complete:A_BomoEE_comp70094_c0_seq4
550bp
 zerknullt_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0001525 P angiogenesis
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0009952 P anterior/posterior pattern specification
GO:0021546 P rhombomere development
GO:0021615 P glossopharyngeal nerve morphogenesis
GO:0030878 P thyroid gland development
GO:0043565 F sequence-specific DNA binding
GO:0048704 P embryonic skeletal system morphogenesis
GO:0050767 P regulation of neurogenesis
GO:0051216 P cartilage development
GO:0060216 P definitive hemopoiesis
GO:0060324 P face development
12116 O_BomoEE20905_complete:A_BomoEE_comp70094_c0_seq4
302bp
 _Hox_cluster_protein_Shx15_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0043565 F sequence-specific DNA binding
12117 O_BomoEE20906_complete:A_BomoEE_comp70097_c2_seq2
495bp
 PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
12118 O_BomoEE20907_complete:A_BomoEE_comp70097_c2_seq2
106bp
12119 O_BomoEE20908_5prime_partial:A_BomoEE_comp70099_c0_seq1
272bp
 PREDICTED:_uncharacterized_protein_LOC106709922_[Papilio_machaon]
12120 O_BomoEE20909_3prime_partial:A_BomoEE_comp70099_c0_seq1
234bp
 PREDICTED:_uncharacterized_protein_LOC105842941_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
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