Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
1081	O_BomoEE10974_complete:A_BomoEE_comp64661_c0_seq1 237bp	Bomo_Chr8	exosome_complex_exonuclease_Rrp40_[Bombyx_mori]	GO:0000176 C nuclear exosome (RNase complex) GO:0000177 C cytoplasmic exosome (RNase complex) GO:0000178 C exosome (RNase complex) GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006364 P rRNA processing GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' GO:0034475 P U4 snRNA 3'-end processing GO:0035327 C euchromatin GO:0043928 P exonucleolytic catabolism of deadenylated mRNA GO:0045006 P DNA deamination GO:0045190 P isotype switching GO:0045830 P positive regulation of isotype switching GO:0071034 P CUT catabolic process GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process GO:0071049 P nuclear mRNA surveillance GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
1082	O_BomoEE10975_complete:A_BomoEE_comp64661_c0_seq1 163bp	Bomo_Chr8
1083	O_BomoEE10976_5prime_partial:A_BomoEE_comp64661_c0_seq2 436bp	Bomo_Chr8	PREDICTED:_kinase_suppressor_of_Ras_2_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0016020 C membrane GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0035556 P intracellular signal transduction GO:0046872 F metal ion binding
1084	O_BomoEE10977_complete:A_BomoEE_comp64661_c0_seq2 237bp	Bomo_Chr8	exosome_complex_exonuclease_Rrp40_[Bombyx_mori]	GO:0000176 C nuclear exosome (RNase complex) GO:0000177 C cytoplasmic exosome (RNase complex) GO:0000178 C exosome (RNase complex) GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003723 F RNA binding GO:0005634 C nucleus GO:0005730 C nucleolus GO:0005737 C cytoplasm GO:0006364 P rRNA processing GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' GO:0034475 P U4 snRNA 3'-end processing GO:0035327 C euchromatin GO:0043928 P exonucleolytic catabolism of deadenylated mRNA GO:0045006 P DNA deamination GO:0045190 P isotype switching GO:0045830 P positive regulation of isotype switching GO:0071034 P CUT catabolic process GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process GO:0071049 P nuclear mRNA surveillance GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
1085	O_BomoEE10978_complete:A_BomoEE_comp64661_c0_seq2 182bp	Bomo_Chr8
1086	O_BomoEE10979_complete:A_BomoEE_comp64661_c0_seq2 163bp	Bomo_Chr8
1087	O_BomoEE1097_5prime_partial:A_BomoEE_comp24422_c0_seq1 139bp	Bomo_Chr27	PREDICTED:_muscle_calcium_channel_subunit_alpha-1-like_[Bombyx_mori]	GO:0005216 F ion channel activity GO:0005244 F voltage-gated ion channel activity GO:0005245 F voltage-gated calcium channel activity GO:0005262 F calcium channel activity GO:0005891 C voltage-gated calcium channel complex GO:0006810 P transport GO:0006811 P ion transport GO:0006816 P calcium ion transport GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0034765 P regulation of ion transmembrane transport GO:0046872 F metal ion binding GO:0055085 P transmembrane transport GO:0070588 P calcium ion transmembrane transport
1088	O_BomoEE10980_complete:A_BomoEE_comp64661_c0_seq2 133bp	Bomo_Chr8
1089	O_BomoEE10981_3prime_partial:A_BomoEE_comp64662_c0_seq1 324bp	Bomo_Chr10	WD_repeat-containing_protein_66_[Papilio_xuthus]
1090	O_BomoEE10982_internal:A_BomoEE_comp64662_c0_seq2 438bp	Bomo_Chr10	PREDICTED:_WD_repeat-containing_protein_66-like_[Papilio_machaon]
1091	O_BomoEE10983_complete:A_BomoEE_comp64662_c1_seq2 105bp	Bomo_Chr18
1092	O_BomoEE10984_complete:A_BomoEE_comp64667_c0_seq1 142bp	Bomo_Chr28	Immune-related_Hdd1_[Operophtera_brumata]
1093	O_BomoEE10985_complete:A_BomoEE_comp64667_c0_seq1 126bp	Bomo_Chr28
1094	O_BomoEE10986_complete:A_BomoEE_comp64667_c0_seq1 104bp	Bomo_Chr28
1095	O_BomoEE10987_5prime_partial:A_BomoEE_comp64673_c0_seq1 278bp	Bomo_Chr1	FK506-binding_protein_precursor_[Bombyx_mori]	GO:0000413 P protein peptidyl-prolyl isomerization GO:0003755 F peptidyl-prolyl cis-trans isomerase activity GO:0005783 C endoplasmic reticulum GO:0006457 P protein folding GO:0008152 P metabolic process GO:0016853 F isomerase activity
1096	O_BomoEE10988_5prime_partial:A_BomoEE_comp64673_c0_seq2 268bp	Bomo_Chr1	FK506-binding_protein_precursor_[Bombyx_mori]	GO:0000413 P protein peptidyl-prolyl isomerization GO:0003755 F peptidyl-prolyl cis-trans isomerase activity GO:0005509 F calcium ion binding GO:0005783 C endoplasmic reticulum GO:0005788 C endoplasmic reticulum lumen GO:0006457 P protein folding GO:0008152 P metabolic process GO:0016853 F isomerase activity GO:0046872 F metal ion binding
1097	O_BomoEE10989_complete:A_BomoEE_comp64673_c0_seq2 171bp	Bomo_Chr1
1098	O_BomoEE1098_internal:A_BomoEE_comp24431_c0_seq1 284bp	Bomo_Scaf166	TRAS3_[Bombyx_mori]
1099	O_BomoEE10990_5prime_partial:A_BomoEE_comp64673_c0_seq3 290bp	Bomo_Chr1	FK506-binding_protein_precursor_[Bombyx_mori]	GO:0000413 P protein peptidyl-prolyl isomerization GO:0003755 F peptidyl-prolyl cis-trans isomerase activity GO:0005509 F calcium ion binding GO:0005783 C endoplasmic reticulum GO:0005788 C endoplasmic reticulum lumen GO:0006457 P protein folding GO:0008152 P metabolic process GO:0016853 F isomerase activity GO:0046872 F metal ion binding
1100	O_BomoEE10991_internal:A_BomoEE_comp64675_c0_seq1 146bp	Bomo_Chr17
1101	O_BomoEE10992_3prime_partial:A_BomoEE_comp64675_c0_seq1 146bp	Bomo_Chr17
1102	O_BomoEE10993_5prime_partial:A_BomoEE_comp64675_c0_seq1 132bp	Bomo_Chr17	PREDICTED:_uncharacterized_protein_LOC101743057_[Bombyx_mori]
1103	O_BomoEE10994_5prime_partial:A_BomoEE_comp64675_c0_seq1 121bp	Bomo_Chr17
1104	O_BomoEE10995_complete:A_BomoEE_comp64677_c0_seq1 508bp	Bomo_Chr15	PREDICTED:_folylpolyglutamate_synthase,_mitochondrial-like_isoform_X1_[Papilio_machaon]	GO:0000166 F nucleotide binding GO:0001889 P liver development GO:0004326 F tetrahydrofolylpolyglutamate synthase activity GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0005759 C mitochondrial matrix GO:0005829 C cytosol GO:0006139 P nucleobase-containing compound metabolic process GO:0006536 P glutamate metabolic process GO:0006730 P one-carbon metabolic process GO:0006760 P folic acid-containing compound metabolic process GO:0007420 P brain development GO:0008283 P cell population proliferation GO:0009058 P biosynthetic process GO:0009396 P folic acid-containing compound biosynthetic process GO:0016020 C membrane GO:0016874 F ligase activity GO:0031100 P animal organ regeneration GO:0046655 P folic acid metabolic process GO:0046901 P tetrahydrofolylpolyglutamate biosynthetic process
1105	O_BomoEE10996_complete:A_BomoEE_comp64681_c0_seq1 736bp	Bomo_Chr25	PREDICTED:_dolichyl-phosphate-mannose--protein_mannosyltransferase_4_isoform_X1_[Amyelois_transitella]	GO:0000030 F mannosyltransferase activity GO:0004169 F dolichyl-phosphate-mannose-protein mannosyltransferase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006486 P protein glycosylation GO:0006493 P protein O-linked glycosylation GO:0007275 P multicellular organism development GO:0007517 P muscle organ development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0030259 P lipid glycosylation GO:0035269 P protein O-linked mannosylation GO:0097502 P mannosylation
1106	O_BomoEE10997_complete:A_BomoEE_comp64681_c0_seq1 175bp	Bomo_Chr25
1107	O_BomoEE10998_complete:A_BomoEE_comp64681_c0_seq1 117bp	Bomo_Chr25
1108	O_BomoEE10999_complete:A_BomoEE_comp64681_c0_seq2 606bp	Bomo_Chr25	PREDICTED:_dolichyl-phosphate-mannose--protein_mannosyltransferase_4_isoform_X2_[Amyelois_transitella]	GO:0000030 F mannosyltransferase activity GO:0004169 F dolichyl-phosphate-mannose-protein mannosyltransferase activity GO:0005783 C endoplasmic reticulum GO:0005789 C endoplasmic reticulum membrane GO:0006486 P protein glycosylation GO:0006493 P protein O-linked glycosylation GO:0007275 P multicellular organism development GO:0007517 P muscle organ development GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0030259 P lipid glycosylation GO:0035269 P protein O-linked mannosylation GO:0097502 P mannosylation
1109	O_BomoEE1099_complete:A_BomoEE_comp24431_c0_seq1 147bp	Bomo_Scaf166
1110	O_BomoEE109_internal:A_BomoEE_comp1991_c1_seq1 355bp	Bomo_Chr1	PREDICTED:_kettin_protein_isoform_X1_[Bombyx_mori]	GO:0000794 C condensed nuclear chromosome GO:0003779 F actin binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005694 C chromosome GO:0005737 C cytoplasm GO:0005863 C striated muscle myosin thick filament GO:0005875 C microtubule associated complex GO:0007049 P cell cycle GO:0007062 P sister chromatid cohesion GO:0007067 P mitotic cell cycle GO:0007076 P mitotic chromosome condensation GO:0007498 P mesoderm development GO:0007517 P muscle organ development GO:0007519 P skeletal muscle tissue development GO:0007520 P myoblast fusion GO:0007522 P visceral muscle development GO:0007525 P somatic muscle development GO:0008307 F structural constituent of muscle GO:0016203 P muscle attachment GO:0019233 P sensory perception of pain GO:0030017 C sarcomere GO:0030018 C Z disc GO:0031674 C I band GO:0035206 P regulation of hemocyte proliferation GO:0040011 P locomotion GO:0045214 P sarcomere organization GO:0051301 P cell division