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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10021 O_BomoEE1901_5prime_partial:A_BomoEE_comp33050_c0_seq2
144bp
 PREDICTED:_rotatin-like_isoform_X1_[Bombyx_mori]
10022 O_BomoEE19020_5prime_partial:A_BomoEE_comp69611_c0_seq5
102bp
10023 O_BomoEE19021_complete:A_BomoEE_comp69611_c0_seq6
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10024 O_BomoEE19022_5prime_partial:A_BomoEE_comp69611_c0_seq6
102bp
10025 O_BomoEE19023_complete:A_BomoEE_comp69611_c0_seq7
174bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10026 O_BomoEE19024_5prime_partial:A_BomoEE_comp69611_c0_seq7
102bp
10027 O_BomoEE19025_complete:A_BomoEE_comp69611_c0_seq8
105bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10028 O_BomoEE19026_complete:A_BomoEE_comp69611_c0_seq9
174bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10029 O_BomoEE19027_5prime_partial:A_BomoEE_comp69611_c0_seq9
102bp
10030 O_BomoEE19028_complete:A_BomoEE_comp69611_c0_seq11
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10031 O_BomoEE19029_5prime_partial:A_BomoEE_comp69611_c0_seq11
102bp
10032 O_BomoEE1902_3prime_partial:A_BomoEE_comp33060_c0_seq1
848bp
 PREDICTED:_uncharacterized_protein_LOC101739826_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
10033 O_BomoEE19030_complete:A_BomoEE_comp69611_c0_seq12
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10034 O_BomoEE19031_5prime_partial:A_BomoEE_comp69611_c0_seq12
102bp
10035 O_BomoEE19032_complete:A_BomoEE_comp69611_c0_seq14
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10036 O_BomoEE19033_5prime_partial:A_BomoEE_comp69611_c0_seq14
102bp
10037 O_BomoEE19034_complete:A_BomoEE_comp69611_c0_seq15
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10038 O_BomoEE19035_complete:A_BomoEE_comp69611_c0_seq15
105bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10039 O_BomoEE19036_5prime_partial:A_BomoEE_comp69611_c0_seq15
102bp
10040 O_BomoEE19037_complete:A_BomoEE_comp69611_c0_seq17
149bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10041 O_BomoEE19038_5prime_partial:A_BomoEE_comp69611_c0_seq17
102bp
10042 O_BomoEE19039_complete:A_BomoEE_comp69611_c0_seq19
289bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10043 O_BomoEE1903_complete:A_BomoEE_comp33060_c0_seq1
202bp
10044 O_BomoEE19040_5prime_partial:A_BomoEE_comp69611_c0_seq19
102bp
10045 O_BomoEE19041_complete:A_BomoEE_comp69611_c0_seq20
238bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10046 O_BomoEE19042_5prime_partial:A_BomoEE_comp69611_c0_seq20
102bp
10047 O_BomoEE19043_complete:A_BomoEE_comp69611_c0_seq21
250bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10048 O_BomoEE19044_5prime_partial:A_BomoEE_comp69611_c0_seq21
102bp
10049 O_BomoEE19045_complete:A_BomoEE_comp69611_c0_seq22
231bp
 PREDICTED:_structure-specific_endonuclease_subunit_SLX1_homolog_[Amyelois_transitella]
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
10050 O_BomoEE19046_5prime_partial:A_BomoEE_comp69611_c0_seq22
102bp
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